CB293852

Overview
NameCB293852
Unique NameCB293852
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1773 contig Csv1_Contig1773:321..1056. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293852 vs. ExPASy Swiss-Prot
Match: LAR_DESUN (Leucoanthocyanidin reductase OS=Desmodium uncinatum GN=LAR PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 95/229 (41.48%), Postives = 139/229 (60.70%), Query Frame = 1 
Query:   55 SKSKILSIGGTGYIGKFIVEASVKAGHQTFVLVRESTLSDPSKSQLLDHFKNLGVNFVIGDVLNHESLVKAIKQ--VDVVISTVGHTLIADQVKIIAAIKEAGNVKRFFPSEFGIDDDRIHGAVEPAKSTYDVKAKIRRAVEAEGIPYTYVASYGLNGHFLPNLSQPEATAPPRDKVVILGDGNPKAVYNKEDDVATFTIKAVDDPRTLNKNLYIQPPGNIYSFNDLVS 735
            +K++ L +GGTG+IG+FI +AS+  G+ TF+LVR   +S PSK+ ++  F++ G   + G + + E + K +K+  +DVVIS VG   + DQ+ ++ AIK    +KRF PSEFG D DR    VEP  + Y  K  +RRAVE  GIP+T +    +      +   P    PP D+  I GDGN KA +   +D+  FT+K +DD RTLNKN++ +P  N YS N+L S
Sbjct:   11 TKNRTLVVGGTGFIGQFITKASLGFGYPTFLLVRPGPVS-PSKAVIIKTFQDKGAKVIYGVINDKECMEKILKEYEIDVVISLVGGARLLDQLTLLEAIKSVKTIKRFLPSEFGHDVDRTD-PVEPGLTMYKEKRLVRRAVEEYGIPFTNICCNSIASWPYYDNCHPSQVPPPMDQFQIYGDGNTKAYFIDGNDIGKFTMKTIDDIRTLNKNVHFRPSSNCYSINELAS 237
The following BLAST results are available for this feature:
BLAST of CB293852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
LAR_DESUN5.333e-4341.48Leucoanthocyanidin reductase OS=Desmodium uncinatu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc05_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293852 ID=CB293852; Name=CB293852; organism=Citrus sinensis; type=EST; length=736bp
GTTTTTTAAAAAAAAAAACTCCGGAATTGAACTGAACGAGTTTCAGACAT
GGCATCGAAAAGCAAGATTCTATCCATCGGCGGGACAGGGTACATCGGTA
AATTCATCGTGGAAGCAAGCGTTAAAGCTGGTCACCAGACGTTCGTGCTC
GTGAGAGAATCCACACTCTCTGATCCCTCCAAATCTCAACTCCTCGACCA
CTTCAAAAACCTCGGCGTCAATTTCGTTATCGGAGATGTTTTGAATCACG
AGAGTTTGGTGAAGGCGATAAAACAAGTGGACGTGGTGATATCAACAGTT
GGTCACACTTTAATAGCCGATCAGGTCAAGATTATTGCTGCCATTAAAGA
AGCCGGCAACGTTAAGAGATTCTTCCCGTCGGAATTTGGAATTGATGATG
ATCGAATCCATGGAGCCGTAGAGCCAGCAAAATCAACGTATGACGTAAAG
GCGAAAATCCGCCGAGCCGTTGAGGCAGAAGGCATTCCGTATACTTATGT
AGCATCGTACGGTTTGAATGGCCACTTCCTTCCCAATTTGTCGCAGCCTG
AGGCCACTGCCCCCCCTAGGGATAAGGTCGTCATCTTAGGTGATGGAAAT
CCAAAAGCTGTTTATAACAAGGAAGATGATGTTGCAACCTTCACCATCAA
AGCGGTTGACGATCCGAGAACCTTGAACAAAAACCTTTACATTCAGCCTC
CCGGCAATATTTACTCGTTCAATGATCTTGTGTCTA
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