CB293879

Overview
NameCB293879
Unique NameCB293879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig755 contig Csv1_Contig755:139..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.309e-21
Identity = 71/224 (31.70%), Postives = 110/224 (49.11%), Query Frame = 1
Query:   37 NGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINK-PPNSLHGGFKGFDKVVW---EVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTT---MRLDMEA----VPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG 675
            NG  +V I+N+GA I +  +     N   + LGFD+++ Y++   PFFG  +GRVANRI  G   ++G  Y + +N+    SLHGG  G++K  +    V   +K +  ++ F     DG EGYPGDV     YT+  +     + ++ EA          T +SL  H+YWN+ G+       H   +   H+     ++ PTG+I  V  T  D     K+G
Sbjct:  371 NGKFEVSISNHGATIVAAKL-----NGIKLNLGFDNLKGYLREDNPFFGATIGRVANRISKGDLLINGTHYQVGLNELHRTSLHGGTYGYNKRTFLGPIVKTNEKEKETTMEFVLIDLDGTEGYPGDVETKVIYTVRDTGVGGELGIEYEAKLLEESGRDSTAVSLTNHSYWNI-GNQPSIEGTHIKLVSNKHLESNPLDSTPTGKI--VTSTDLDSQNSAKLG 586          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GALM_STRTR (Aldose 1-epimerase OS=Streptococcus thermophilus GN=galM PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.015e-21
Identity = 76/263 (28.90%), Postives = 121/263 (46.01%), Query Frame = 1
Query:   28 ELNNGTMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGC-IVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDF--TTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSGGLNLW 807
            E NNG +   +T  GA +    VP + G   ++VLGF   E Y K       C  +GRVA RI    ++ + V Y+LP N+  N LHGG KG     W        +     F  R     +G+PGDV+V  +Y L ++  + +  EA    + T  +   H Y+NL+     ++  H +QI+  +   +D   +PTG+ + V  T +DF  TT+       N     G+D  +V+  G     +K  A L +  +  G+ ++
Sbjct:   22 ENNNGVVISTLTT-GATLQEFLVPMETGALKNIVLGFSDFEDYYKNN--LCACQSIGRVAGRIGKASYTHNMVLYSLPKNEGDNCLHGGPKGMQVQNWNYVTNLNDDYVETKFIRRLYSSVDGFPGDVTVSISYRLNNNNRLTILFEAFDVTESTVFNPTNHVYFNLSDKQ--DLSSHELQIYSDYRLELDSELIPTGQKINVDETNYDFRKTTDLLPRIEANN----GFDDAFVVG-GGTCDHVKEVAILHDKESGDGIEIF 274          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.717e-21
Identity = 73/262 (27.86%), Postives = 128/262 (48.85%), Query Frame = 1
Query:   46 MQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINK-PPNSLHGGFKGFDK--VVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKP---TPISLAQHTYWNLAGHH---SGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLD-------CGEEKSGLKHAAKLKEPS 783
            ++V I NYGA++ ++    ++     +V GF+    Y     PFFG  +GR ANRI +G+F +DG  YTL  N+    +LHGG  GFDK   +  +A   +  N ++ F    +DG  G+P D+  +  YT+ +++        +PE      T ++L  H+YWNLA  +    G I+  +  +   ++    + ++PTG+I+  +    D T   K+       P + +D+ +++D           K  LK+  ++  PS
Sbjct:  378 LEVSIANYGALVQAVRYKGRN-----LVNGFNDFSRYKLKENPFFGATIGRFANRIANGQFEVDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYN-TLEFILVDKDGNNGFPSDLETLVKYTIKNNSLEIEYKSVIPEYSKLNVTAVNLTNHSYWNLASPNKTIDGTIIKSTTNV---YLKVNSETSLPTGDIVEWQN---DITKPTKLD------PNISFDNCFIVDREASKFCLDTRKYSLKNIVEVIHPS 621          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GAL10_YEAST (Bifunctional protein GAL10 OS=Saccharomyces cerevisiae GN=GAL10 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 65/216 (30.09%), Postives = 97/216 (44.91%), Query Frame = 1
Query:   49 QVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEG--YPGDVSVMATYTLTSSTTMRLDMEAVPENK-----PTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIG 675
            Q    N GA I  L V     N   VVLG+++ E Y+   + + G  +GR ANRI  GKFSL   +Y L +N   N+ H     F +  +     +       T +Y   D E+   +PGD+ V   YT+      +  +E V + K      TPI+L  H+Y+NL   +   I    I +       VD+N +PTG I+  +   F+ T    +G
Sbjct:  385 QATFANLGASIVDLKV-----NGQSVVLGYENEEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTV---NVAQKSLEMVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEIMVRSKKSVDVDKNMIPTGNIVDREIATFNSTKPTVLG 592          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: YH10_YEAST (Uncharacterized isomerase YHR210C OS=Saccharomyces cerevisiae GN=YHR210C PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.953e-14
Identity = 61/235 (25.96%), Postives = 108/235 (45.96%), Query Frame = 1
Query:   46 MQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGE---EGYPGDVSVMATYTL-TSSTTMRLDMEA-VPENKPTPISLAQHTYWNL-AGHHSGNILDHSIQIWGSHITPVDQNT-VPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLD 729
            +Q  I+  GA +  L V     N   +VLG+  +  Y+     + G  VGR ANRI  G FS++   + L +N   N+ H     F    ++ ++ +   +     ++   D       +PGD++V   YTL  +  T+ L+ EA +   + TPI++  HTY+NL       +I    +++       V +   +PTG+I+  K   FD +       +I +  G  YD+ +++D
Sbjct:   21 LQATISELGATLLDLKV-----NNESIVLGYPDIHGYISDGYNYIGATVGRYANRIYKGMFSMEDGPHQLTVNNCGNTNHSSISSFHLKKYKASKVQNPLDDLYIVEFTLLDDRTLPNEFPGDLAVNLKYTLNVADMTLDLEYEAKLVSGEATPINMTNHTYFNLNKTMDKKSISGTEVRLCSDKSLEVSEGALIPTGKIVQRKIATFDSSK-----PTILQDDGPIYDYAFIVD 245          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: GAL10_KLULA (Bifunctional protein GAL10 OS=Kluyveromyces lactis GN=GAL10 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.022e-13
Identity = 58/205 (28.29%), Postives = 91/205 (44.39%), Query Frame = 1
Query:   22 VFELNNGT-MQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPP-NSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTS-STTMRLDMEA-VPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEI 624
            V  L  GT  +VK+ N GA I  + V     N   VV   D+   Y   + PFFG  VG  ANRI +G F ++G    L ++K   N +H G   +    +     K  E    T  ++  D E  +P  +S +  Y + S   T+ ++ E+ V     T  ++  HTY+NL   +   I    +Q+  +    V+   +PTG +
Sbjct:  364 VVSLGKGTSFEVKLANLGATIVDIVV-----NGCSVVASLDNETEYKDQSNPFFGATVGPYANRIANGTFEINGKRIQLTVSKEDGNVVHSGINSYHSKKFLGPIVKNPEAHIWTADFKYVDEETEFPARLSTLVRYKVDSEKKTLTVEYESKVAGQGSTGANITNHTYFNLNKFNEATIKGSKVQLIDNTGLEVNNKLLPTGNL 563          
BLAST of CB293879 vs. ExPASy Swiss-Prot
Match: YN9A_YEAST (Uncharacterized isomerase YNR071C OS=Saccharomyces cerevisiae GN=YNR071C PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.722e-12
Identity = 66/218 (30.28%), Postives = 97/218 (44.50%), Query Frame = 1
Query:   49 QVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKG--ENPS-----ITFKY---RSRDGEEGYPGDVSVMATYTLTSSTTMRLDME---AVPENKPTPISLAQHTYWNLAGHHS-GNILDHSIQIWGSHITPVDQNT-VPTGEIMPVKGTPFDFT 657
            Q  I   GA +  L V     N   VV G+ +V+ Y+       G  VGR ANRI  G FSLD   + L +N   N+ H      +     + +YK    ENPS     + FK     ++     +PGD+ V   YTL +   M LDME    +     TPI++  H+Y+NL    S  +I    +++  +    V +   +PTG+I+      FD T
Sbjct:   22 QATIAPLGATLVDLKV-----NGQSVVQGYSNVQDYLTDGN-MMGATVGRYANRIAKGVFSLDDGPHKLTVNNCGNTNHSSISSLN-----LKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTL-NVAEMTLDMEYQAQLVRGDATPINMTNHSYFNLNKVKSEKSIRGTEVKVCSNKSLEVTEGALLPTGKIIERNIATFDST 227          
The following BLAST results are available for this feature:
BLAST of CB293879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GAL10_PACTA2.309e-2131.70Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]
GALM_STRTR3.015e-2128.90Aldose 1-epimerase OS=Streptococcus thermophilus G... [more]
GAL10_SCHPO6.717e-2127.86Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
GAL10_YEAST9.078e-1830.09Bifunctional protein GAL10 OS=Saccharomyces cerevi... [more]
YH10_YEAST7.953e-1425.96Uncharacterized isomerase YHR210C OS=Saccharomyces... [more]
GAL10_KLULA3.022e-1328.29Bifunctional protein GAL10 OS=Kluyveromyces lactis... [more]
YN9A_YEAST9.722e-1230.28Uncharacterized isomerase YNR071C OS=Saccharomyces... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06dd08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293879 ID=CB293879; Name=CB293879; organism=Citrus sinensis; type=EST; length=808bp
GCCCTTAAGTTAAAACCAGAAGTGTTTGAACTGAACAATGGAACCATGCA
AGTCAAAATTACCAATTATGGAGCCATTATCACCTCACTTTCTGTACCTG
ACAAACATGGAAATTGGGCTGACGTTGTTCTTGGATTCGACTCTGTCGAA
CCATACGTGAAAGGTGCTGCACCTTTTTTTGGCTGCATTGTGGGTAGGGT
TGCTAACAGAATTAAAGATGGGAAGTTTTCTCTCGACGGGGTTGAATACA
CTTTGCCCATCAACAAGCCACCAAACAGTCTCCATGGTGGGTTCAAGGGT
TTTGATAAAGTTGTCTGGGAGGTAGCAGAATATAAGAAAGGTGAAAACCC
TTCCATTACTTTCAAGTATCGCAGCCGTGATGGCGAGGAAGGTTACCCAG
GGGATGTTTCTGTGATGGCAACCTACACACTAACATCAAGCACGACAATG
AGGCTTGACATGGAAGCAGTTCCAGAAAACAAGCCGACCCCAATCAGTTT
AGCTCAACACACGTACTGGAACTTAGCAGGCCATCATTCAGGGAACATAC
TTGACCACTCAATTCAAATATGGGGATCACACATTACTCCTGTAGATCAG
AACACGGTCCCAACTGGAGAAATTATGCCAGTCAAGGGCACCCCTTTTGA
TTTCACCACTGAGAAAAAGATTGGTGCATCAATCAATGAAGTACCTGGTT
TAGGGTATGATCACAACTATGTTCTTGATTGTGGAGAAGAGAAATCAGGT
CTGAAACATGCTGCAAAACTGAAGGAACCATCAACCTCAGGGGGCCTTAA
TTTATGGA
back to top