CB293880

Overview
NameCB293880
Unique NameCB293880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293880_ssr335 microsatellite CB293880_ssr335:335..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:487..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_RAT (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Rattus norvegicus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 8.904e-63
Identity = 113/186 (60.75%), Postives = 135/186 (72.58%), Query Frame = -3 
Query:  234 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 791
            KYT+Q+ ++H+EWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WS DG  LF+GYTD ++RVW +
Sbjct:  139 KYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_PIG (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Sus scrofa GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 8.904e-63
Identity = 113/186 (60.75%), Postives = 135/186 (72.58%), Query Frame = -3 
Query:  234 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 791
            KYT+Q+ ++H+EWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WS DG  LF+GYTD ++RVW +
Sbjct:  139 KYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_MOUSE (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Mus musculus GN=Gnb2l1 PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 8.904e-63
Identity = 113/186 (60.75%), Postives = 135/186 (72.58%), Query Frame = -3 
Query:  234 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 791
            KYT+Q+ ++H+EWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WS DG  LF+GYTD ++RVW +
Sbjct:  139 KYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_MACFA (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Macaca fascicularis GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 8.904e-63
Identity = 113/186 (60.75%), Postives = 135/186 (72.58%), Query Frame = -3 
Query:  234 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 791
            KYT+Q+ ++H+EWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WS DG  LF+GYTD ++RVW +
Sbjct:  139 KYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_HUMAN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Homo sapiens GN=GNB2L1 PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 8.904e-63
Identity = 113/186 (60.75%), Postives = 135/186 (72.58%), Query Frame = -3 
Query:  234 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 791
            KYT+Q+ ++H+EWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WS DG  LF+GYTD ++RVW +
Sbjct:  139 KYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_CHICK (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Gallus gallus GN=GNB2L1 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.904e-63
Identity = 113/186 (60.75%), Postives = 135/186 (72.58%), Query Frame = -3 
Query:  234 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 791
            KYT+Q+ ++H+EWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WS DG  LF+GYTD ++RVW +
Sbjct:  139 KYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_BOVIN (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Bos taurus GN=GNB2L1 PE=2 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 8.904e-63
Identity = 113/186 (60.75%), Postives = 135/186 (72.58%), Query Frame = -3 
Query:  234 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 791
            KYT+Q+ ++H+EWVSCVRFSPN+  P IVS  WD+ VKVWNL+NCKL+    GHTGY+NTV VSPDGSLCASGGKDG  +LWDL EGK LY+LD G +I+ALCFSPNRYWLCAAT  SIKIWDLE K IV++LK ++                      CTSL WS DG  LF+GYTD ++RVW +
Sbjct:  139 KYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPP-----------QCTSLAWSADGQTLFAGYTDNLVRVWQV 312
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_HYDAT (Guanine nucleotide-binding protein subunit beta-like protein OS=Hydra attenuata GN=RACK1 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 5.771e-62
Identity = 115/188 (61.17%), Postives = 133/188 (70.74%), Query Frame = -3 
Query:  228 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 791
            KYTIQ+ ++H+EWVSCVRFSPNT  P IVS  WD+ VKVWNL+NCKL+    GHTGY+N V VSPDGSLCASGGKDG  +LWDL EGK LY+LD G VI+ALCFSPNRYWLCAAT   IKIWDLE KS+V++LK  +                      C SL WS DG  LF+GYTD +IRVW + R
Sbjct:  139 KYTIQD-ESHSEWVSCVRFSPNTQNPIIVSCGWDKMVKVWNLTNCKLKTNHFGHTGYLNAVTVSPDGSLCASGGKDGNAMLWDLNEGKHLYTLDGGNVINALCFSPNRYWLCAATGPMIKIWDLEMKSVVDELKPGVIGISTKSRAAD-----------CISLAWSADGQTLFAGYTDNLIRVWQVTR 314
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.167e-60
Identity = 114/187 (60.96%), Postives = 131/187 (70.05%), Query Frame = -3 
Query:  234 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLD-AGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 791
            KYTIQ+ D HT+W SCVRFSPNT  P IVS+ WDR VKVWNL+NCKL+    GHTGYVNTV VSPDGSLCASGGKD   +LWDL EGK LY+LD AG  I+ALCFSPNRYWLC A+  SIKIWDLE K +V++LK ++                      C SL WS DG  LF+GYTD +IRVW +
Sbjct:  139 KYTIQD-DCHTDWTSCVRFSPNTQNPIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLYTLDGAGDTINALCFSPNRYWLCVASGPSIKIWDLEGKVVVDELKPEVMGTTSKAPT-------------CLSLAWSADGQTLFAGYTDKLIRVWQV 311
[Close]
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBLP_NEUCR (Guanine nucleotide-binding protein subunit beta-like protein OS=Neurospora crassa GN=cpc-2 PE=3 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.301e-57
Identity = 108/186 (58.06%), Postives = 124/186 (66.67%), Query Frame = -3 
Query:  234 KYTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 791
            K+TI E   HTEWVSCVRFSPN   P IVS+ WD+ VKVW LS+CKL+    GHTGY+N V +SPDGSLCASGGKDG  +LWDL E K LYSL+A   IHAL FSPNRYWLCAAT  SI I+DLE KS V++LK +                       C SL WS DG  LF+GYTD +IR WG+
Sbjct:  139 KFTITE-KGHTEWVSCVRFSPNPQNPVIVSSGWDKLVKVWELSSCKLQTDHIGHTGYINAVTISPDGSLCASGGKDGTTMLWDLNESKHLYSLNANDEIHALVFSPNRYWLCAATSSSIIIFDLEKKSKVDELKPEFQNIGKKSREPE-----------CVSLAWSADGQTLFAGYTDNIIRAWGV 312
The following BLAST results are available for this feature:
BLAST of CB293880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
GBLP_RAT8.904e-6360.75Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_PIG8.904e-6360.75Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MOUSE8.904e-6360.75Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_MACFA8.904e-6360.75Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_HUMAN8.904e-6360.75Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_CHICK8.904e-6360.75Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_BOVIN8.904e-6360.75Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_HYDAT5.771e-6261.17Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BIOGL3.167e-6060.96Guanine nucleotide-binding protein subunit beta-2-... [more]
GBLP_NEUCR7.301e-5758.06Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293880 ID=CB293880; Name=CB293880; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATACGCTAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGGGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAAATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGC
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