CB293880

Overview
NameCB293880
Unique NameCB293880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB3_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Mus musculus GN=Gnb3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.304e-13
Identity = 56/184 (30.43%), Postives = 87/184 (47.28%), Query Frame = -3
Query:  240 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 779
            +E  AHT ++SC RF  +     IV++S D T  +W++   + +    GHTG   ++AVSPD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +     +                    +I C  TS+ +S+ G  LF+GY D    VW
Sbjct:  137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSQE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB3_RAT (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Rattus norvegicus GN=Gnb3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 56/184 (30.43%), Postives = 87/184 (47.28%), Query Frame = -3
Query:  240 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 779
            +E  AHT ++SC RF  +     IV++S D T  +W++   + +    GHTG   ++AVSPD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +     +                    +I C  TS+ +S+ G  LF+GY D    VW
Sbjct:  137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDYKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSHE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB3_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Homo sapiens GN=GNB3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.703e-13
Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = -3
Query:  240 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 779
            +E  AHT ++SC RF  +     IV++S D T  +W++   + +    GHTG   ++AVSPD +L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +                         ++I C  TS+ +S+ G  LF+GY D    VW
Sbjct:  137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFNLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQEL--------------------ICFSHESIICGITSVAFSLSGRLLFAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB3_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3 OS=Canis familiaris GN=GNB3 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.224e-13
Identity = 55/184 (29.89%), Postives = 87/184 (47.28%), Query Frame = -3
Query:  240 QEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPNRYWLCAATEQ-SIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 779
            +E  AHT ++SC RF  +     IV++S D T  +W++   + +    GHTG   ++AVSPD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +C  ++  S +++DL +   +     +                    +I C  TS+ +S+ G  LF+GY D    +W
Sbjct:  137 RELSAHTGYLSCCRFLDDN---NIVTSSGDTTCALWDIETGQQKTVFVGHTGDCMSLAVSPDFKLFISGACDASAKLWDVREGTCRQTFTGHESDINAICFFPNGEAICTGSDDASCRLFDLRADQELTAYSDE--------------------SIICGITSVAFSLSGRLLFAGYDDFNCNIW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.954e-13
Identity = 50/181 (27.62%), Postives = 86/181 (47.51%), Query Frame = -3
Query:  234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSP-LFSGYTDGVIRVWGI 764
            H+++V C  F+P +    IVS S+D +VK+W +   K   TL+ H+  ++ V  + +GSL  SG  DG+  +WD A G+ L +L  +    +  + FSPN +Y L A  + ++K+WD      ++                           YC   ++SV G   + SG  D ++ +W +
Sbjct:  122 HSDFVFCCDFNPPS--NLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLK------------------TYTGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIWNL 282          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.470e-13
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = -3
Query:  390 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLK 764
            HT WV C +FSP+     IVS S D+T+K+W+ +N +     +   G+ N V  +P G+  AS G D  + +WD+   K L  Y + +G V + + F P+  Y + A+++ ++KI DL    ++  L+
Sbjct:  143 HTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGV-NCISFHPSGNYLITASSDGTLKILDLLEGRLIYTLQ 267          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.450e-13
Identity = 50/181 (27.62%), Postives = 85/181 (46.96%), Query Frame = -3
Query:  234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSL--DAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSP-LFSGYTDGVIRVWGI 764
            H+++V C  F+P +    IVS S+D +VK+W +   K   TL+ H+  ++ V    +GSL  SG  DG+  +WD A G+ L +L  +    +  + FSPN +Y L A  + ++K+WD      ++                           YC   ++SV G   + SG  D ++ +W +
Sbjct:  122 HSDFVFCCDFNPPS--NLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDSTLKLWDYSRGRCLK------------------TYTGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIWNL 282          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WD51B_PONAB (WD repeat-containing protein 51B OS=Pongo abelii GN=WDR51B PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.450e-13
Identity = 42/128 (32.81%), Postives = 71/128 (55.47%), Query Frame = -3
Query:  390 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRL--YSLDAGAVIHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLK 764
            HT WV C +FSP+     IVS S D+T+K+W+ +N +     +   G+ N V  +P G+  AS G D  + +WD+   K L  Y + +G V + + F P + Y + A+++ ++KI DL    ++  L+
Sbjct:  143 HTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPSGTCIASAGSDQTVKVWDVRVNKLLQHYQVHSGGV-NCISFHPSDNYLVTASSDGTLKILDLLEGRLIYTLQ 267          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.104e-12
Identity = 48/177 (27.12%), Postives = 87/177 (49.15%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D  L  SG  D  + +W+L+ GK L +L   +     C F+P    + + + ++S++IWD+ +   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   71 HTKAVSAVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 225          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: POF1_SCHPO (F-box/WD repeat-containing protein pof1 OS=Schizosaccharomyces pombe GN=pof1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.104e-12
Identity = 57/178 (32.02%), Postives = 79/178 (44.38%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSV--DGSPLFSGYTDGVIRVW 764
            HT+ V C+ F    L    VS S D TVK+W+ S  K R TL GHTG VN+V +  D  L  SG  D  I +W L     L++  A    + +L  + +R + C + + +IK WD+E K  V  L   +                           W +  D   L SG  DGV++VW
Sbjct:  352 HTDSVLCLTFDSTLL----VSGSADCTVKLWHFSGGK-RITLRGHTGPVNSVRIIRDRGLVLSGSDDSTIKIWSLETNTCLHTFSAHIGPVQSLALADSRLFSC-SLDGTIKQWDIEKKKCVHTLFGHIEGV------------------------WEIAADHLRLISGAHDGVVKVW 499          
The following BLAST results are available for this feature:
BLAST of CB293880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
GBB3_MOUSE1.304e-1330.43Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB3_RAT1.703e-1330.43Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB3_HUMAN1.703e-1330.43Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB3_CANFA2.224e-1329.89Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
WDR5B_MOUSE4.954e-1327.62WD repeat-containing protein 5B OS=Mus musculus GN... [more]
WD51B_HUMAN6.470e-1332.81WD repeat-containing protein 51B OS=Homo sapiens G... [more]
WDR5B_RAT8.450e-1327.62WD repeat-containing protein 5B OS=Rattus norvegic... [more]
WD51B_PONAB8.450e-1332.81WD repeat-containing protein 51B OS=Pongo abelii G... [more]
WDS_DROME1.104e-1227.12Protein will die slowly OS=Drosophila melanogaster... [more]
POF1_SCHPO1.104e-1232.02F-box/WD repeat-containing protein pof1 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293880 ID=CB293880; Name=CB293880; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATACGCTAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGGGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAAATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGC
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