CB293880
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12 Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = -3 Query: 393 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDL 770 + H V V F P+ +VSAS+D T ++W++ GH+ + ++A PDGSL +SGG D + +WDL GK + LD I A+ +SPN Y L ++ + ++KIWDL S+ + Sbjct: 262 EGHLARVGRVAFHPSG--DYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTI 387
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12 Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3 Query: 240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764 HT+ VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12 Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3 Query: 240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764 HT+ VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12 Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3 Query: 240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764 HT+ VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12 Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3 Query: 240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764 HT+ VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12 Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3 Query: 240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764 HT+ VS V+FSPN + S+S D+ +K+W + K T++GH ++ VA S D +L S D + +WD++ GK L +L + C F+P + + + ++S++IWD+++ ++ L ++++++ DGS + S DG+ R+W Sbjct: 44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12 Identity = 55/186 (29.57%), Postives = 85/186 (45.70%), Query Frame = -3 Query: 234 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 782 + +G A+ W + SP +L S S DRT ++W+ AGH V+ V P+ + A+G D + LW +G RL++ G V+ +L FSPN +Y A +Q +K+WDL S ++ ++L+ NI TSL +S D + S D +RVW I Sbjct: 379 LYQGHAYPVWD--LDISPYSLY--FASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELR------------------GHTDNI--TSLTFSPDSGLIASASMDNSVRVWDI 539 HSP 2 Score: 69.3218 bits (168), Expect = 2.718e-11 Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = -3 Query: 414 YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV--IHALCFSPNRYWLCAAT-EQSIKIWDLES 788 Y ++ H V CV+F PN+ + + S D+TV++W+ GH G V ++A SP+G AS G+D + LWDLA G LY G I +L FSP+ + +A+ + S+++WD+ + Sbjct: 417 YPLRIYAGHLADVDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG-TLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRN 541
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11 Identity = 37/125 (29.60%), Postives = 67/125 (53.60%), Query Frame = -3 Query: 396 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAATEQS-IKIWDLESKSIVED 764 HT V C++F N+ + +V+ S ++++W+L K+ TL GH ++++ P G ASG D I LWD+ ++ + L FSP+ WL +A++ S +K+WDL + ++ + Sbjct: 62 HTSAVGCIQF--NSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITE 184
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11 Identity = 46/177 (25.99%), Postives = 81/177 (45.76%), Query Frame = -3 Query: 240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764 HT WV C +FSP+ IVS S D+T+K+W+ +N + + G+ N V +P+G+ AS G D + +WD+ K L + ++ L F P + A+++ ++K+ DL ++ L+ ++++S DG L SG D + +W Sbjct: 143 HTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVF--------------------TVSFSKDGELLTSGGADAQVLIW 297
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11 Identity = 38/127 (29.92%), Postives = 66/127 (51.97%), Query Frame = -3 Query: 417 YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA--VIHALCFS-PNRYWLCAATEQSIKIWDLE 788 Y ++ H V CV F PN + + S D+T ++W++S GHT V ++AV PDG ++G +DG+I +WD+ GKRL + I++L +S + + ++++WDL+ Sbjct: 600 YPLRIFAGHLNDVDCVSFHPNGCY--VFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVRVWDLK 724 The following BLAST results are available for this feature:
BLAST of CB293880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CB293880 ID=CB293880; Name=CB293880; organism=Citrus sinensis; type=EST; length=793bpback to top |