CB293880

Overview
NameCB293880
Unique NameCB293880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: YIDC_SCHPO (Uncharacterized WD repeat-containing protein C227.12 OS=Schizosaccharomyces pombe GN=SPAC227.12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12
Identity = 44/128 (34.38%), Postives = 69/128 (53.91%), Query Frame = -3
Query:  393 DAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAG-AVIHALCFSPNRYWLC-AATEQSIKIWDLESKSIVEDL 770
            + H   V  V F P+     +VSAS+D T ++W++          GH+  + ++A  PDGSL +SGG D +  +WDL  GK +  LD     I A+ +SPN Y L  ++ + ++KIWDL   S+   +
Sbjct:  262 EGHLARVGRVAFHPSG--DYLVSASFDTTWRLWDVHTGVELLMQEGHSEGIFSIACQPDGSLVSSGGNDAIGRIWDLRSGKSIMVLDEHIRQIVAMAWSPNGYQLATSSADDTVKIWDLRKVSLAHTI 387          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_MOUSE (WD repeat-containing protein 5 OS=Mus musculus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_HUMAN (WD repeat-containing protein 5 OS=Homo sapiens GN=WDR5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR5_BOVIN (WD repeat-containing protein 5 OS=Bos taurus GN=WDR5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 47/177 (26.55%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALC-FSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764
            HT+ VS V+FSPN     + S+S D+ +K+W   + K   T++GH   ++ VA S D +L  S   D  + +WD++ GK L +L   +     C F+P    + + + ++S++IWD+++   ++ L                           ++++++ DGS + S   DG+ R+W
Sbjct:   44 HTKAVSSVKFSPNG--EWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--------------------VSAVHFNRDGSLIVSSSYDGLCRIW 198          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: TAF5L_HUMAN (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 55/186 (29.57%), Postives = 85/186 (45.70%), Query Frame = -3
Query:  234 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 782
            + +G A+  W   +  SP +L     S S DRT ++W+          AGH   V+ V   P+ +  A+G  D  + LW   +G   RL++   G V+ +L FSPN +Y   A  +Q +K+WDL S ++ ++L+                      NI  TSL +S D   + S   D  +RVW I
Sbjct:  379 LYQGHAYPVWD--LDISPYSLY--FASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELR------------------GHTDNI--TSLTFSPDSGLIASASMDNSVRVWDI 539          

HSP 2 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 43/128 (33.59%), Postives = 69/128 (53.91%), Query Frame = -3
Query:  414 YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV--IHALCFSPNRYWLCAAT-EQSIKIWDLES 788
            Y ++    H   V CV+F PN+    + + S D+TV++W+           GH G V ++A SP+G   AS G+D  + LWDLA G  LY    G    I +L FSP+   + +A+ + S+++WD+ +
Sbjct:  417 YPLRIYAGHLADVDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG-TLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRN 541          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: KTNB1_DANRE (Katanin p80 WD40-containing subunit B1 OS=Danio rerio GN=katnb1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 37/125 (29.60%), Postives = 67/125 (53.60%), Query Frame = -3
Query:  396 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAATEQS-IKIWDLESKSIVED 764
            HT  V C++F  N+ +  +V+ S   ++++W+L   K+  TL GH   ++++   P G   ASG  D  I LWD+     ++        +  L FSP+  WL +A++ S +K+WDL +  ++ +
Sbjct:   62 HTSAVGCIQF--NSSEERVVAGSLSGSLRLWDLEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITE 184          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WD51B_MOUSE (WD repeat-containing protein 51B OS=Mus musculus GN=Wdr51b PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 46/177 (25.99%), Postives = 81/177 (45.76%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSP-NRYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVW 764
            HT WV C +FSP+     IVS S D+T+K+W+ +N +     +   G+ N V  +P+G+  AS G D  + +WD+   K L      +  ++ L F P     + A+++ ++K+ DL    ++  L+                           ++++S DG  L SG  D  + +W
Sbjct:  143 HTHWVRCAKFSPDGR--LIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVF--------------------TVSFSKDGELLTSGGADAQVLIW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: TAF5_YEAST (Transcription initiation factor TFIID subunit 5 OS=Saccharomyces cerevisiae GN=TAF5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 38/127 (29.92%), Postives = 66/127 (51.97%), Query Frame = -3
Query:  417 YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA--VIHALCFS-PNRYWLCAATEQSIKIWDLE 788
            Y ++    H   V CV F PN     + + S D+T ++W++S         GHT  V ++AV PDG   ++G +DG+I +WD+  GKRL  +       I++L +S      +    + ++++WDL+
Sbjct:  600 YPLRIFAGHLNDVDCVSFHPNGCY--VFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGKRLKQMRGHGKNAIYSLSYSKEGNVLISGGADHTVRVWDLK 724          
The following BLAST results are available for this feature:
BLAST of CB293880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
YIDC_SCHPO1.441e-1234.38Uncharacterized WD repeat-containing protein C227.... [more]
WDR5_XENTR2.459e-1226.55WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT2.459e-1226.55WD repeat-containing protein 5 OS=Rattus norvegicu... [more]
WDR5_MOUSE2.459e-1226.55WD repeat-containing protein 5 OS=Mus musculus GN=... [more]
WDR5_HUMAN2.459e-1226.55WD repeat-containing protein 5 OS=Homo sapiens GN=... [more]
WDR5_BOVIN2.459e-1226.55WD repeat-containing protein 5 OS=Bos taurus GN=WD... [more]
TAF5L_HUMAN9.343e-1229.57TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
KTNB1_DANRE1.220e-1129.60Katanin p80 WD40-containing subunit B1 OS=Danio re... [more]
WD51B_MOUSE1.594e-1125.99WD repeat-containing protein 51B OS=Mus musculus G... [more]
TAF5_YEAST1.594e-1129.92Transcription initiation factor TFIID subunit 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293880 ID=CB293880; Name=CB293880; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATACGCTAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGGGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAAATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGC
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