CB293880

Overview
NameCB293880
Unique NameCB293880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB1_RAT (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Rattus norvegicus GN=Gnb1 PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB1_PONAB (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Pongo abelii GN=GNB1 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB1_MOUSE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Mus musculus GN=Gnb1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB1_HUMAN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Homo sapiens GN=GNB1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB1_DANRE (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Danio rerio GN=gnb1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 54/179 (30.17%), Postives = 85/179 (47.49%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T AGHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +    ++L V                     NI C  TS+ +S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFAGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMV-----------------YSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB1_CANFA (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Canis familiaris GN=GNB1 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB1_BOVIN (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Bos taurus GN=GNB1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 41/127 (32.28%), Postives = 67/127 (52.76%), Query Frame = -3
Query:  414 YTIQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLES 788
            Y ++    H   V CV+F PN+    + + S D+TV++W+           GH G V +++ SP+G   AS G+D  + LWDLA G     L      I +L FSP+   + +A+ + S+++WD+ S
Sbjct:  417 YPLRIYAGHLADVDCVKFHPNSNY--LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRS 541          

HSP 2 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 54/186 (29.03%), Postives = 83/186 (44.62%), Query Frame = -3
Query:  234 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK--RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 782
            + +G A+  W   V  SP +L     S S DRT ++W+          AGH   V+ V   P+ +  A+G  D  + LW   +G   RL++   G V+ +L FSPN +Y   A  +Q +K+WDL S ++ ++L+                          TSL +S D   + S   D  +RVW I
Sbjct:  379 LYQGHAYPVWD--VDISPFSLY--FASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVL-SLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELR--------------------GHTDSITSLAFSPDSGLIASASMDNSVRVWDI 539          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: Y1491_SYNY3 (Uncharacterized WD repeat-containing protein sll1491 OS=Synechocystis sp. (strain PCC 6803) GN=sll1491 PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 48/172 (27.91%), Postives = 81/172 (47.09%), Query Frame = -3
Query:  234 VRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 743
            V F+P+  Q    +   DRT+K W+ +  +L  T     G++N +AV+PDG     G     +  W+LA+ K L+S+   ++ I+ +  SPN  W+  A  E +I I+DL +   V  L+                        +  SL +S DG+ L+SG  D  +++W +
Sbjct:  193 VVFTPDGSQFITGAIGQDRTIKFWDANTFELLGTSPQQPGFINGLAVTPDGRKLV-GAVRNFVKAWNLADAKELFSVRGPSLEINTIAVSPNNRWVATANKEGTIMIFDLANGKQVTTLR--------------------GHQGWVLSLAFSPDGNTLYSGAEDKTVKIWDL 343          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: GBB1_CRIGR (Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 OS=Cricetulus griseus GN=GNB1 PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 52/179 (29.05%), Postives = 83/179 (46.37%), Query Frame = -3
Query:  240 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK-RLYSLDAGAVIHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYC--TSLNWSVDGSPLFSGYTDGVIRVW 764
            HT ++SC RF  +     IV++S D T  +W++   +   T  GHTG V +++++PD  L  SG  D    LWD+ EG  R       + I+A+CF PN   +   + + + +++DL +   +     D                    NI C  TS+++S  G  L +GY D    VW
Sbjct:  142 HTGYLSCCRFLNDN---QIVTSSEDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD--------------------NIICGITSVSFSKSGRLLLAGYDDFNCNVW 297          
The following BLAST results are available for this feature:
BLAST of CB293880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
GBB1_RAT1.594e-1129.05Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_PONAB1.594e-1129.05Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_MOUSE1.594e-1129.05Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_HUMAN1.594e-1129.05Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_DANRE1.594e-1130.17Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_CANFA1.594e-1129.05Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
GBB1_BOVIN1.594e-1129.05Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]
TAF5L_MOUSE2.081e-1132.28TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
Y1491_SYNY32.718e-1127.91Uncharacterized WD repeat-containing protein sll14... [more]
GBB1_CRIGR2.718e-1129.05Guanine nucleotide-binding protein G(I)/G(S)/G(T) ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06dd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293880 ID=CB293880; Name=CB293880; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATACGCTAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGGGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAAATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGC
back to top