CB293880

Overview
NameCB293880
Unique NameCB293880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293880_ssr335 microsatellite CB293880_ssr335:335..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13759 contig Csv1_Contig13759:487..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 51/202 (25.25%), Postives = 82/202 (40.59%), Query Frame = -3
Query:  234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQ-SIKIWDLESKSIVEDLK---------------------VDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 764
            H   V C +F PN    T+ SA +DR + +WN+  +C   ATL GH+G V  +  + DGS+  S   D  + +WD   G+R+  L         C+   R    +C  ++  ++K+WD+  K+ V+  +                     +D                        T L+ S +GS L S   D  +RVW +
Sbjct:   66 HEGEVYCCKFHPNG--STLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDV 265          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = -3
Query:  393 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDL 764
            HT  V  VRF  N  +  IV+ S   ++++W+L   K+  TL GH   V+++   P G   ASG  D  I LWD+     ++        +  L FSP+  WL +A+ + S+K+WDL +  ++ +L
Sbjct:   62 HTTPVESVRF--NNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAEL 185          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 55/178 (30.90%), Postives = 81/178 (45.51%), Query Frame = -3
Query:  234 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 755
            W +    S      TIV+ S D  VKVW  S+ KL    TL GH   V +V +S +G++ AS   D  I LWDL  GK++ S+DAG V    + FSP+  ++   +    + I+ +ES      L                      +  +  S+ +S DG  L SG  DG+I ++ I
Sbjct:   20 WTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_XENTR (WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 54/190 (28.42%), Postives = 82/190 (43.16%), Query Frame = -3
Query:  228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 764
            HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +  A           +TE+ +++WD  +   +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCQKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROVI (WD repeat-containing protein 48 homolog OS=Drosophila virilis GN=GJ15009 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 55/196 (28.06%), Postives = 88/196 (44.90%), Query Frame = -3
Query:  228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782
            IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROSI (WD repeat-containing protein 48 homolog OS=Drosophila simulans GN=GD25924 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 55/196 (28.06%), Postives = 86/196 (43.88%), Query Frame = -3
Query:  228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782
            IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD  +   +  L+                     +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRIMKLR------------------GHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROSE (WD repeat-containing protein 48 homolog OS=Drosophila sechellia GN=GM20456 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 55/196 (28.06%), Postives = 86/196 (43.88%), Query Frame = -3
Query:  228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782
            IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD  +   +  L+                     +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRIMKLR------------------GHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROMO (WD repeat-containing protein 48 homolog OS=Drosophila mojavensis GN=GI19644 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 55/196 (28.06%), Postives = 88/196 (44.90%), Query Frame = -3
Query:  228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782
            IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROGR (WD repeat-containing protein 48 homolog OS=Drosophila grimshawi GN=GH21936 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 55/196 (28.06%), Postives = 88/196 (44.90%), Query Frame = -3
Query:  228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782
            IQ  + H +WV+ +    N     ++SAS D TVKVWN       +TL  H  YV  +A + D    AS G D  I LWD+     L + +              I++L  +P+    +  +TE  ++IWD   ++ +  +K+                    +N+ C  L  S DG+ + SG +DG I+VW +G+
Sbjct:   66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239          
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = -3
Query:  228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW-----------LCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 764
            HT+WV+ +    N    T++SAS D TVKVWN       +TL  H  YV  +A + D  L AS G D  I LWD+     L + +      +L  + +  +           +  +TE+ +++WD  + + +  LK                      N+    LN   DG+   SG +DG IR+W +G+
Sbjct:   74 HTDWVNDIILCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQTGTVIISGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKSLLLN--RDGTQCLSGSSDGTIRLWSLGQ 241          
The following BLAST results are available for this feature:
BLAST of CB293880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
SNR40_MOUSE3.550e-1125.25U5 small nuclear ribonucleoprotein 40 kDa protein ... [more]
KTNB1_XENLA3.550e-1132.54Katanin p80 WD40-containing subunit B1 OS=Xenopus ... [more]
WDR61_DANRE4.637e-1130.90WD repeat-containing protein 61 OS=Danio rerio GN=... [more]
WDR48_XENTR4.637e-1128.42WD repeat-containing protein 48 OS=Xenopus tropica... [more]
WDR48_DROVI4.637e-1128.06WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROSI4.637e-1128.06WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROSE4.637e-1128.06WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROMO4.637e-1128.06WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROGR4.637e-1128.06WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DANRE4.637e-1127.89WD repeat-containing protein 48 OS=Danio rerio GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dd09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dd09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293880 ID=CB293880; Name=CB293880; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTTTTTTTTAATGTAACACATCTAAAATAATACGCTAAACCA
AAACACCAGAGGCCTCAAAGCCATATAAGATCCAAATAAAGAGAACAAAA
TATCCTTAAAAACATTTTGAACAAAATCTTAAATCTTAAATAGGTCTGAA
ACTGCCTACAAAGTCGAGAAACTAGTTTGTAATCGAAAAAGAACAGCAGT
TTGCAATTACTCAAGCAGTTTTCAATAACGGCCAATACCCCAGACTCTGA
TCACACCATCTGTATAACCACTGAACAAGGGGCTTCCATCAACACTCCAG
TTCAAGCTTGTGCAGTAAATGTTCTTCTTTTTTATGGTGGTGGTGGCGGT
GGTGGCCTCAAATTTCTCGGCCTCGGTCTTAAGATCAACCTTAAGATCCT
CGACAATGCTCTTGCTCTCCAAATCCCAGATCTTTATACTCTGCTCAGTC
GCCGCACACAACCAATACCTATTAGGACTGAAGCAGAGCGCGTGAATGAC
AGCACCAGCGTCGAGCGAGTAGAGTCTTTTTCCCTCAGCCAAATCCCACA
ACAGAATCACACCATCTTTCCCTCCACTGGCACACAACGAACCATCCGGC
GACACTGCGACGGTGTTCACGTATCCAGTGTGCCCGGCAAGAGTAGCCCT
AAGCTTGCAGTTGCTCAAATTCCACACTTTGACCGTACGGTCCCACGAGG
CGGAAACGATAGTGGGCTGAAGCGTGTTGGGGCTGAACCTAACACAAGAA
ACCCACTCAGTGTGAGCGTCTCCCTCTTGAATCGTGTACTTGC
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