CB293880
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: SNR40_MOUSE (U5 small nuclear ribonucleoprotein 40 kDa protein OS=Mus musculus GN=Snrnp40 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11 Identity = 51/202 (25.25%), Postives = 82/202 (40.59%), Query Frame = -3 Query: 234 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNL-SNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNR--YWLCAATEQ-SIKIWDLESKSIVEDLK---------------------VDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 764 H V C +F PN T+ SA +DR + +WN+ +C ATL GH+G V + + DGS+ S D + +WD G+R+ L C+ R +C ++ ++K+WD+ K+ V+ + +D T L+ S +GS L S D +RVW + Sbjct: 66 HEGEVYCCKFHPNG--STLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSSEGSYLLSNAMDNTVRVWDV 265
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: KTNB1_XENLA (Katanin p80 WD40-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.550e-11 Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = -3 Query: 393 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGA-VIHALCFSPNRYWLCAAT-EQSIKIWDLESKSIVEDL 764 HT V VRF N + IV+ S ++++W+L K+ TL GH V+++ P G ASG D I LWD+ ++ + L FSP+ WL +A+ + S+K+WDL + ++ +L Sbjct: 62 HTTPVESVRF--NNSEELIVAGSQSGSLRIWDLEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVRCLRFSPDGKWLASASDDHSVKLWDLTAGKMMAEL 185
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR61_DANRE (WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 55/178 (30.90%), Postives = 81/178 (45.51%), Query Frame = -3 Query: 234 WVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRA--TLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV-IHALCFSPNRYWLCAATE-QSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGI 755 W + S TIV+ S D VKVW S+ KL TL GH V +V +S +G++ AS D I LWDL GK++ S+DAG V + FSP+ ++ + + I+ +ES L + + S+ +S DG L SG DG+I ++ I Sbjct: 20 WTAAWGRSEKDGSETIVTGSLDDLVKVWKWSDEKLELQWTLEGHQLGVVSVNISQNGAIAASSSLDAHIRLWDLETGKQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDT--------------------RGKFILSIAYSPDGKYLASGAIDGIINIFDI 177
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_XENTR (WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 54/190 (28.42%), Postives = 82/190 (43.16%), Query Frame = -3 Query: 228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYWLCA-----------ATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 764 HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + A +TE+ +++WD + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 74 HTDWVNDIVLCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMGTVIVSGSTEKVLRVWDPRTCQKLMKLK------------------GHTDNVKALLLN--RDGTQCLSGSSDGTIRLWSLGQ 241
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROVI (WD repeat-containing protein 48 homolog OS=Drosophila virilis GN=GJ15009 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 55/196 (28.06%), Postives = 88/196 (44.90%), Query Frame = -3 Query: 228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782 IQ + H +WV+ + N ++SAS D TVKVWN +TL H YV +A + D AS G D I LWD+ L + + I++L +P+ + +TE ++IWD ++ + +K+ +N+ C L S DG+ + SG +DG I+VW +G+ Sbjct: 66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROSI (WD repeat-containing protein 48 homolog OS=Drosophila simulans GN=GD25924 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 55/196 (28.06%), Postives = 86/196 (43.88%), Query Frame = -3 Query: 228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782 IQ + H +WV+ + N ++SAS D TVKVWN +TL H YV +A + D AS G D I LWD+ L + + I++L +P+ + +TE ++IWD + + L+ +N+ C L S DG+ + SG +DG I+VW +G+ Sbjct: 66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRIMKLR------------------GHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROSE (WD repeat-containing protein 48 homolog OS=Drosophila sechellia GN=GM20456 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 55/196 (28.06%), Postives = 86/196 (43.88%), Query Frame = -3 Query: 228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782 IQ + H +WV+ + N ++SAS D TVKVWN +TL H YV +A + D AS G D I LWD+ L + + I++L +P+ + +TE ++IWD + + L+ +N+ C L S DG+ + SG +DG I+VW +G+ Sbjct: 66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMRIMKLR------------------GHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROMO (WD repeat-containing protein 48 homolog OS=Drosophila mojavensis GN=GI19644 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 55/196 (28.06%), Postives = 88/196 (44.90%), Query Frame = -3 Query: 228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782 IQ + H +WV+ + N ++SAS D TVKVWN +TL H YV +A + D AS G D I LWD+ L + + I++L +P+ + +TE ++IWD ++ + +K+ +N+ C L S DG+ + SG +DG I+VW +G+ Sbjct: 66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DROGR (WD repeat-containing protein 48 homolog OS=Drosophila grimshawi GN=GH21936 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 55/196 (28.06%), Postives = 88/196 (44.90%), Query Frame = -3 Query: 228 IQEGDAHTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAV----------IHALCFSPN-RYWLCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 782 IQ + H +WV+ + N ++SAS D TVKVWN +TL H YV +A + D AS G D I LWD+ L + + I++L +P+ + +TE ++IWD ++ + +K+ +N+ C L S DG+ + SG +DG I+VW +G+ Sbjct: 66 IQSMEHHNDWVNDIVLCCNGRN--LISASCDTTVKVWNAHKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTALTASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWD--PRTCMRSMKL----------------RGHTENVRC--LVVSPDGNQVVSGSSDGTIKVWNLGQ 239
BLAST of CB293880 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11 Identity = 53/190 (27.89%), Postives = 83/190 (43.68%), Query Frame = -3 Query: 228 HTEWVSCVRFSPNTLQPTIVSASWDRTVKVWNLSNCKLRATLAGHTGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGKRLYSLDAGAVIHALCFSPNRYW-----------LCAATEQSIKIWDLESKSIVEDLKVDLXXXXXXXXXXXXXXXXXXKNIYCTSLNWSVDGSPLFSGYTDGVIRVWGIGR 764 HT+WV+ + N T++SAS D TVKVWN +TL H YV +A + D L AS G D I LWD+ L + + +L + + + + +TE+ +++WD + + + LK N+ LN DG+ SG +DG IR+W +G+ Sbjct: 74 HTDWVNDIILCCNG--KTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQTGTVIISGSTEKVLRVWDPRTCAKLMKLK------------------GHTDNVKSLLLN--RDGTQCLSGSSDGTIRLWSLGQ 241 The following BLAST results are available for this feature:
BLAST of CB293880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 98
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Sequences
The
following sequences are available for this feature:
EST sequence >CB293880 ID=CB293880; Name=CB293880; organism=Citrus sinensis; type=EST; length=793bpback to top |