CB293885

Overview
NameCB293885
Unique NameCB293885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: GPI8_PONAB (GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 66/234 (28.21%), Postives = 112/234 (47.86%), Query Frame = 3
Query:   39 TMTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 722
            +++R AS +   LL++   +A            +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    +  I   EL D  ++      Y  L+F ++ C+  S++E
Sbjct:    6 SLSRAASTLAAVLLLSFGSVAASH---------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYE 213          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: GPI8_HUMAN (GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 67/229 (29.26%), Postives = 109/229 (47.60%), Query Frame = 3
Query:   54 ASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 722
            A+ VL T+L+   G    S         +  +A +FF +G                WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    +  I   EL D  ++      Y  L+F ++ C+  S++E
Sbjct:   10 AATVLATVLLLSFGSVAASH--------IEDQAEQFFRSGHTN------------NWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYE 213          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: GPI8_BOVIN (GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 56/173 (32.37%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  222 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 722
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY   +VTVENF  V+ G   + T  S +++ S    +I I+ + HGG G L    +  I   EL D  ++      Y  L+F ++ C+  S++E
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYEVTVENFLRVLTGRIPSSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYE 213          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: GPI8_YEAST (GPI-anchor transamidase OS=Saccharomyces cerevisiae GN=GPI8 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 51/168 (30.36%), Postives = 93/168 (55.36%), Query Frame = 3
Query:  222 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINH-PHGDDVY-KGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIF 719
            WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD+A N  N  PG + N+  H  D+Y   V  DY G +VTVENF  ++    T     S +++ +  N +IFI+ + HGG   L       I ++++ D  ++ +    Y  + F ++ C++ +++
Sbjct:   39 WAVLVSTSRFWFNYRHMANVLSMYRTVKRLGIPDSQIILMLSDDVACNSRNLFPGSVFNNKDHAIDLYGDSVEVDYRGYEVTVENFIRLLTDRWTEDHPKSKRLL-TDENSNIFIYMTGHGGDDFLKFQDAEEIASEDIADAFQQMYEKKRYNEIFFMIDTCQANTMY 205          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: GPI8_PIG (GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 56/173 (32.37%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  222 WAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHP------HGDDVYKGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 722
            WAVL+  S  ++NYRH A+    Y+ +++ G+ D +I++ + DD+A N  NP+P  + +H       +GDD    V  DY    VTVENF  V+ G     T  S +++ S    +I I+ + HGG G L    +  I   EL D  ++      Y  L+F ++ C+  S++E
Sbjct:   46 WAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVYSHKNMELNVYGDD----VEVDYRSYVVTVENFLRVLTGRIPPSTPRSKRLL-SDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFEQMWQKRRYNELLFIIDTCQGASMYE 213          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: GPI8_CAEEL (Putative GPI-anchor transamidase OS=Caenorhabditis elegans GN=T05E11.6 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.330e-19
Identity = 53/188 (28.19%), Postives = 97/188 (51.60%), Query Frame = 3
Query:  168 NGGGGAKVNDDDDSVG--TRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVY-KGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIFE 722
            N G   K+++  D+ G    WAVL+  S  ++NYRH +++   Y  +++ G+ D NII+ + +D+  N  NPRPG +     G ++Y   V  DY GE+VTVE+F  V+ G     T  S +++ +    ++ I+ + HGG   +    +  +   +L   ++       Y  ++   ++C S S++E
Sbjct:   19 NTGLQLKIDELFDTPGHTNNWAVLVCTSKFWFNYRHVSNVLALYHSIKRLGIPDSNIIMMLAEDVPCNSRNPRPGTVYAARAGTNLYGSDVEVDYRGEEVTVESFIRVLTGRHHPATPRSKRLL-TDHQSNVLIYLTGHGGDSFMKFQDSEELTNVDLAYAIQTMFEDNRYHEMLVIADSCRSASMYE 205          
BLAST of CB293885 vs. ExPASy Swiss-Prot
Match: GPI8_SCHPO (GPI-anchor transamidase OS=Schizosaccharomyces pombe GN=gpi8 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.696e-18
Identity = 49/175 (28.00%), Postives = 93/175 (53.14%), Query Frame = 3
Query:  201 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVII-NHPHGDDVY-KGVPKDYTGEDVTVENFFAVVLGNKTALTGGSGKVVDSGPNDHIFIFYSDHGGPGVLGMPTTRYIYADELIDVLKKKHASGNYKSLVFYLEACESGSIF 719
            + S    WAVL++ S  ++NYRH A++   Y+ +++ G+ D  II+ + DD A N  N  PG +  N     D+Y + +  DY G +VTVE F  ++       T  S +++ +    +I I+ + HGG G +       + +++L D +++ H    Y  ++F ++ C++ S++
Sbjct:   20 ESSHTNNWAVLISTSRFWFNYRHTANVLGIYRSVKRLGIPDSQIILMIADDYACNSRNLFPGTVFDNADRALDLYGEEIEIDYKGYEVTVEAFIRLLTERVPENTPASKRLL-TNERSNILIYMTGHGGDGFIKFQDAEELSSEDLADAIEQIHQHKRYNEILFMVDTCQANSLY 193          
The following BLAST results are available for this feature:
BLAST of CB293885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
GPI8_PONAB3.338e-2128.21GPI-anchor transamidase OS=Pongo abelii GN=PIGK PE... [more]
GPI8_HUMAN9.713e-2129.26GPI-anchor transamidase OS=Homo sapiens GN=PIGK PE... [more]
GPI8_BOVIN9.713e-2132.37GPI-anchor transamidase OS=Bos taurus GN=PIGK PE=2... [more]
GPI8_YEAST6.296e-2030.36GPI-anchor transamidase OS=Saccharomyces cerevisia... [more]
GPI8_PIG6.296e-2032.37GPI-anchor transamidase OS=Sus scrofa GN=PIGK PE=2... [more]
GPI8_CAEEL5.330e-1928.19Putative GPI-anchor transamidase OS=Caenorhabditis... [more]
GPI8_SCHPO7.696e-1828.00GPI-anchor transamidase OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293885 ID=CB293885; Name=CB293885; organism=Citrus sinensis; type=EST; length=735bp
GCCCTAGGCTCCAGCAACCAATCAACCCCCTTCAAAAAACCATGACGCGC
CTTGCCTCCGGCGTGCTAATCACGCTCCTAGTCGCTCTTGCAGGAATCGC
CGATGGAAGCAGAGACATAGCAGGTGACATTCTGAAGCTACCATCGGAAG
CCTATAGGTTCTTCCATAATGGTGGGGGAGGGGCAAAGGTCAACGATGAT
GATGATTCTGTCGGCACGAGATGGGCCGTCCTGCTTGCCGGATCTAATGG
CTTCTGGAATTACAGGCATCAGGCTGATATTTGTCATGCTTATCAACTCT
TGAGGAAAGGTGGGCTGAAGGATGAAAATATTATTGTTTTCATGTATGAT
GACATCGCTTTCAATGAAGAGAACCCAAGGCCTGGAGTCATCATTAACCA
CCCCCATGGCGATGATGTTTACAAAGGAGTTCCAAAGGATTACACGGGGG
AAGATGTTACTGTTGAAAACTTTTTTGCTGTTGTCCTGGGAAATAAAACA
GCTCTTACAGGGGGCAGTGGGAAGGTTGTGGATAGCGGCCCCAATGATCA
TATTTTCATATTCTACTCAGATCATGGTGGCCCTGGGGTGCTAGGGATGC
CCACCACTCGATACATATATGCTGATGAACTGATCGATGTCTTAAAAAAG
AAGCATGCTTCTGGGAACTACAAAAGCTTGGTATTTTATCTCGAAGCCTG
TGAATCTGGAAGTATCTTTGAGGGTCTTCTTCCTG
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