CB293896

Overview
NameCB293896
Unique NameCB293896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:492..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: PEPT1_PSOOV (Peptidase 1 OS=Psoroptes ovis PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.105e-15
Identity = 62/216 (28.70%), Postives = 102/216 (47.22%), Query Frame = -1
Query:  229 GAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKL-VSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANL-VKNGPLAVAINAVYMQTYIGGVSCPYICS----RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVD 858
            G V  +K+Q +CGSCW+FS    +E +N+L+   + + LSEQ+LVDC          +   GC G  + +   Y ++  G++ E+ YPY    R   C+   +K         +   + D+I   L  K   L+V I    + ++        + S    +R  H + +VGYGS        +   YWII+NSW  +WG+ GY      +N+ G++
Sbjct:  120 GYVTKIKNQVACGSCWAFSGVATVE-SNYLSYDNVSLDLSEQELVDC----------ASQHGCGGDTVLNGLRY-IQKNGVVEEQSYPYKA--REGRCQRPNAKRYGIKDLCQIYPPNGDKIRTYLATKQAALSVIIGIRDLDSFRHYDGRTILQSDNGGKRNFHAINIVGYGSK-------QGVRYWIIRNSWDTTWGDKGYGYFVADKNLMGIE 314          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CPR1_CAEEL (Gut-specific cysteine proteinase OS=Caenorhabditis elegans GN=cpr-1 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.750e-15
Identity = 64/249 (25.70%), Postives = 103/249 (41.37%), Query Frame = -1
Query:  220 AVGXVKDQGSCGSCWSFSTTGALEGANFLAT--GKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREE-------DYPYTGTDRGH-----------ACKFDKSKIAASVANFSV----VSLDEDQIAANLVKNGPLAVAINA----------VYMQT---YIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 855
            ++  ++DQ +CGSCW+F     +     + T   +   +S   L+ C   C      SC +GC GG    A  +    G +   +        YP      G+           +C+   S   A   +F V    V  +   I A +  NGP+  A +           VY  T   Y+GG            H + ++G+G+   +P       YW++ NSWG +WGE+G++KI RG + CG++S V
Sbjct:  100 SIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPIISPDDLLSC---CG----SSCGNGCEGGYPIQALRWWDSKGVVTGGDYHGAGCKPYPIAPCTSGNCPESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSVYEDFYKYKSGVYKHTAGKYLGG------------HAIKIIGWGTESGSP-------YWLVANSWGVNWGESGFFKIYRGDDQCGIESAV 322          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: TINAL_HUMAN (Tubulointerstitial nephritis antigen-like OS=Homo sapiens GN=TINAGL1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.782e-14
Identity = 66/244 (27.05%), Postives = 105/244 (43.03%), Query Frame = -1
Query:  220 DQGSCGSCWSFSTTG-ALEGANFLATGKLVS-LSEQQLVDCD-HECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHA-----CKF-------DKSKIAASVANFSVVSLD-------------EDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 837
            DQG+C   W+FST   A +  +  + G +   LS Q L+ CD H+           GC GG ++ A+ + L+  G++ +  YP++G +R  A     C          K +  A   N  V + D             + +I   L++NGP+   +            +Y  T +  +  P    R   H V + G+G       R  +  YW   NSWG +WGE G+++I RG N C ++S V
Sbjct:  222 DQGNCAGSWAFSTAAVASDRVSIHSLGHMTPVLSPQNLLSCDTHQ---------QQGCRGGRLDGAW-WFLRRRGVVSDHCYPFSGRERDEAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPV-SLGRPERYRRHGTHSVKITGWGEETLPDGRTLK--YWTAANSWGPAWGERGHFRIVRGVNECDIESFV 452          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: TINAL_MOUSE (Tubulointerstitial nephritis antigen-like OS=Mus musculus GN=Tinagl1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.970e-13
Identity = 63/243 (25.93%), Postives = 101/243 (41.56%), Query Frame = -1
Query:  220 DQGSCGSCWSFSTTG-ALEGANFLATGKLVS-LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHA-----CKF-------DKSKIAASVANFSV-------------VSLDEDQIAANLVKNGPLAVAI----------NAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 837
            DQG+C   W+FST   A +  +  + G +   LS Q L+ CD             GC GG ++ A+ + L+  G++ +  YP++G ++  A     C          K +  +   N  V             +  DE +I   L++NGP+   +            +Y  T +     P    R   H V + G+G       R  +  YW   NSWG  WGE G+++I RG N C +++ V
Sbjct:  221 DQGNCAGSWAFSTAAVASDRVSIHSLGHMTPILSPQNLLSCDTH--------HQQGCRGGRLDGAW-WFLRRRGVVSDNCYPFSGREQNEASPTPRCMMHSRAMGRGKRQATSRCPNGQVDSNDIYQVTPAYRLGSDEKEIMKELMENGPVQALMEVHEDFFLYQRGIYSHTPV-SQGRPEQYRRHGTHSVKITGWGEETLPDGRTIK--YWTAANSWGPWWGERGHFRIVRGTNECDIETFV 451          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: TINAG_BOVIN (Tubulointerstitial nephritis antigen OS=Bos taurus GN=TINAG PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.277e-12
Identity = 72/241 (29.88%), Postives = 109/241 (45.23%), Query Frame = -1
Query:  220 DQGSCGSCWSFSTTG-ALEGANFLATGKLVS-LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY-----------------TGTDRGHAC-----KFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQ--TYIGGVSCPYICSRRLD---------HGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 837
            DQ +C + W+FST   A +     + G+  + LS Q L+ C   C  +       GCN G ++ A+ Y L+  GL+    YP                   G  + HA        +KS      +    VS +E +I   +++NGP+  AI  V+     Y  G+   +I S   D         H V L G+G+   A  + KEK +WI  NSWG+SWGENGY++I RG N   ++ ++
Sbjct:  236 DQKNCAASWAFSTASVAADRIAIQSQGRYTANLSPQNLISC---CAKKR-----HGCNSGSVDRAWWY-LRKRGLVSHACYPLFKDQNATNNGCAMASRSDGRGKRHATTPCPNSIEKSNRIYQCSPPYRVSSNETEIMREIMQNGPVQ-AIMQVHEDFFNYKTGIY-RHITSTNEDSEKYRKFRTHAVKLTGWGTLRGAQGQ-KEK-FWIAANSWGKSWGENGYFRILRGVNESDIEKLI 463          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: TINAG_HUMAN (Tubulointerstitial nephritis antigen OS=Homo sapiens GN=TINAG PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.668e-12
Identity = 66/239 (27.62%), Postives = 106/239 (44.35%), Query Frame = -1
Query:  220 DQGSCGSCWSFSTTG-ALEGANFLATGKLVS-LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY-----------------TGTDRGHACKFDKSKIAASVANFSV-----VSLDEDQIAANLVKNGPLAVAINA--------VYMQTYIGGVSCPYICSRRLD-HGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMV 837
            DQ +C + W+FST   A +     + G+  + LS Q L+ C   C          GCN G ++ A+ Y L+  GL+    YP                   G  + HA K   + +  S   +       VS +E +I   +++NGP+   +            +  ++   +      R+L  H V L G+G+   A  + KEK +WI  NSWG+SWGENGY++I RG N   ++ ++
Sbjct:  236 DQKNCAASWAFSTASVAADRIAIQSKGRYTANLSPQNLISC---CAKNR-----HGCNSGSIDRAWWY-LRKRGLVSHACYPLFKDQNATNNGCAMASRSDGRGKRHATKPCPNNVEKSNRIYQCSPPYRVSSNETEIMKEIMQNGPVQAIMQVREDFFHYKTGIYRHVTSTNKESEKYRKLQTHAVKLTGWGTLRGAQGQ-KEK-FWIAANSWGKSWGENGYFRILRGVNESDIEKLI 463          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATZ_HUMAN (Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.853e-12
Identity = 55/206 (26.70%), Postives = 98/206 (47.57%), Query Frame = -1
Query:  259 CGSCWSFSTTGAL-EGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKS------KIAASVANFSVVSLDE-------DQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKI 825
            CGSCW+ ++T A+ +  N    G   S  LS Q ++DC +       GSC+ G +  + + A ++     G+  E    Y   D+    KF++       K   ++ N+++  + +       +++ A +  NGP++  I A   +  Y GG+   Y  +  ++H V + G+G +           YWI++NSWGE WGE G+ +I
Sbjct:   89 CGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA------GSCEGGNDLSVWDYAHQH-----GIPDETCNNYQAKDQ-ECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTE-------YWIVRNSWGEPWGERGWLRI 275          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATZ_RAT (Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.081e-11
Identity = 59/206 (28.64%), Postives = 95/206 (46.12%), Query Frame = -1
Query:  259 CGSCWSFSTTGAL-EGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKS------KIAASVANFSVVSLDE-------DQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKI 825
            CGSCW+  +T AL +  N    G   S  LS Q ++DC +       GSC+    GG     +EY  K G +  E    Y   D+    KF++       K   ++ N+++  + +       +++ A +  NGP++  I A   M  Y GG+   Y     ++H + + G+G +           YWI++NSWGE WGE G+ +I
Sbjct:   91 CGSCWAHGSTSALADRINIKRKGAWPSTLLSVQNVIDCGNA------GSCE----GGNDLPVWEYAHKHG-IPDETCNNYQAKDQ-ECDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERMSNYTGGIYTEYQNQAIINHIISVAGWGVSNDGI------EYWIVRNSWGEPWGERGWMRI 278          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATZ_BOVIN (Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.844e-11
Identity = 56/206 (27.18%), Postives = 90/206 (43.69%), Query Frame = -1
Query:  259 CGSCWSFSTTGAL-EGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRG-------------HACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKI 825
            CGSCW+  +T A+ +  N    G   S  LS Q ++DC       + GSC+ G +  +   A  +     G+  E    Y   D+                C   K+     V ++  +S   +++ A +  NGP++  I A   M  Y GG+   Y     ++H V + G+G +           YWI++NSWGE WGE+G+ +I
Sbjct:   90 CGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCG------DAGSCEGGNDLPVWEYAHRH-----GIPDETCNNYQAKDQECDKFNQCGTCTEFKECHVIKNYTLWKVGDYGSLS-GREKMMAEIYTNGPISCGIMATEKMSNYTGGIYSEYNDQAFINHIVSVAGWGVSD-------GMEYWIVRNSWGEPWGEHGWMRI 276          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATZ_MOUSE (Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.366e-11
Identity = 57/206 (27.67%), Postives = 96/206 (46.60%), Query Frame = -1
Query:  259 CGSCWSFSTTGAL-EGANFLATGKLVS--LSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKS------KIAASVANFSVVSLDE-------DQIAANLVKNGPLAVAINAVYMQT-YIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKI 825
            CGSCW+  +T A+ +  N    G   S  LS Q ++DC +       GSC+    GG     +EY  K G +  E    Y   D+    KF++       K   ++ N+++  + +       +++ A +  NGP++  I A  M + Y GG+   +     ++H + + G+G +           YWI++NSWGE WGE G+ +I
Sbjct:   91 CGSCWAHGSTSAMADRINIKRKGAWPSILLSVQNVIDCGNA------GSCE----GGNDLPVWEYAHKHG-IPDETCNNYQAKDQD-CDKFNQCGTCTEFKECHTIQNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATEMMSNYTGGIYAEHQDQAVINHIISVAGWGVSNDGI------EYWIVRNSWGEPWGEKGWMRI 278          
The following BLAST results are available for this feature:
BLAST of CB293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
PEPT1_PSOOV2.105e-1528.70Peptidase 1 OS=Psoroptes ovis PE=1 SV=1[more]
CPR1_CAEEL2.750e-1525.70Gut-specific cysteine proteinase OS=Caenorhabditis... [more]
TINAL_HUMAN1.782e-1427.05Tubulointerstitial nephritis antigen-like OS=Homo ... [more]
TINAL_MOUSE1.970e-1325.93Tubulointerstitial nephritis antigen-like OS=Mus m... [more]
TINAG_BOVIN1.277e-1229.88Tubulointerstitial nephritis antigen OS=Bos taurus... [more]
TINAG_HUMAN1.668e-1227.62Tubulointerstitial nephritis antigen OS=Homo sapie... [more]
CATZ_HUMAN4.853e-1226.70Cathepsin Z OS=Homo sapiens GN=CTSZ PE=1 SV=1[more]
CATZ_RAT1.081e-1128.64Cathepsin Z OS=Rattus norvegicus GN=Ctsz PE=1 SV=2[more]
CATZ_BOVIN1.844e-1127.18Cathepsin Z OS=Bos taurus GN=CTSZ PE=2 SV=2[more]
CATZ_MOUSE5.366e-1127.67Cathepsin Z OS=Mus musculus GN=Ctsz PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293896 ID=CB293896; Name=CB293896; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTTACACAAAGGAGTTCCACTTAATGACATAATTGAGACAT
TTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATGCATTGAGG
AAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAACATCCAATG
GACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCAGTCACGAA
CAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGACGTTGCGA
CCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCACCCCATGA
ATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGGAGCATAGC
CAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATCGCCTCGAG
CATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATGTACACGGC
ATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGCAGCAATTT
GATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGGCAGCAATC
TTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCGGTGTAAGG
ATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTACTCAAAAG
CACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAACCTGGTTCC
TCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCACTGAGGCT
CACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGCCCCTGTTG
TACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAACANGGCCT
ACAGCGCCCTTCTC
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