CB293896

Overview
NameCB293896
Unique NameCB293896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:492..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATL1_CERAE (Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.639e-42
Identity = 99/220 (45.00%), Postives = 126/220 (57.27%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGVDSMVS 864
            EKG V  VK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC     P+     + GCNGGLM+ AF+Y    GGL  EE YPY  T+   +CK++     A+   F  +   E  +   +   GP++VAI+A +     Y  G+     CS   +DHGVL+VGY   G+         YW++KNSWGE WG  GY K+ +  RN CG+ S  S
Sbjct:  122 EKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCS---GPQG----NEGCNGGLMDYAFQYVADNGGLDSEESYPYEATE--ESCKYNPEYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFMFYKEGIYFEPDCSSEDMDHGVLVVGY---GFESTESDNSKYWLVKNSWGEEWGMGGYIKMAKDRRNHCGIASAAS 329          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 2.639e-42
Identity = 99/220 (45.00%), Postives = 127/220 (57.73%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 864
            +KG V  VK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC            + GCNGGLM++AF+Y    GGL  EE YPY  TD  ++C +     AA+   F  +   E  +   +   GP++VAI+A +   Q Y  G+     CS + LDHGVL+VGYG  G          +WI+KNSWG  WG NGY K+ + + N CG+ +  S
Sbjct:  122 KKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-------AQGNQGCNGGLMDNAFQYIKDNGGLDSEESYPYLATDT-NSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEG---TDSNNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAAS 330          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.446e-42
Identity = 100/220 (45.45%), Postives = 124/220 (56.36%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 864
            EKG V  VK+QG CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC            + GCNGGLM++AF Y    GGL  EE YPY G D    C +     AA+   F  +   E  +   +   GP++VAI+A +   Q Y  G+     CS + LDHGVL+VGYG  G          +WI+KNSWG  WG NGY K+ + + N CG+ +  S
Sbjct:  122 EKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR-------AQGNEGCNGGLMDNAFRYVKDNGGLDSEESYPYLGRDT-ETCNYKPECSAANDTGFVDLPQREKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEGTD----SNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAAS 329          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.501e-42
Identity = 96/222 (43.24%), Postives = 132/222 (59.46%), Query Frame = -1
Query:  217 GAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSK--IAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRN----VCGVDSMVS 858
            GAV  VKDQG+CGSCW+FS  GA+EG N + TG+L+SLSEQ+LVDCD        G  ++GC+GG+MN AFE+ +K GG+  ++DYPY   D G  C  DK+      ++  +  V  D+++     V + P++VAI A     Q Y  GV     C   LDHGV++VGYGS          + YWII+NSWG +WG++GY K+ R  +     CG+  M S
Sbjct:  140 GAVVSVKDQGNCGSCWAFSAVGAVEGINQITTGELISLSEQELVDCDR-------GFVNAGCDGGIMNYAFEFIMKNGGIETDQDYPYNANDLG-LCNADKNNNTRVVTIDGYEDVPRDDEKSLKKAVAHQPVSVAIEASSQAFQLYKSGVMTG-TCGISLDHGVVVVGYGST-------SGEDYWIIRNSWGLNWGDSGYVKLQRNIDDPFGKCGIAMMPS 345          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.677e-42
Identity = 97/220 (44.09%), Postives = 136/220 (61.82%), Query Frame = -1
Query:  217 KGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFS-VVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGV-SCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 861
            KGAV  VKDQG CGSCW+FS+TGALEG +F  +G LVSLSEQ LVDC  +         ++GCNGGLM++AF Y    GG+  E+ YPY   D   +C F+K  + A+   F+ +   DE ++A  +   GP++VAI+A +   Q Y  GV + P   ++ LDHGVL+VG+G+          + YW++KNSWG +WG+ G+ K+ R + N CG+ S  S
Sbjct:  163 KGAVTAVKDQGHCGSCWAFSSTGALEGQHFRKSGVLVSLSEQNLVDCSTKYG-------NNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEAID--DSCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDE------SGEDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASS 367          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.677e-42
Identity = 98/221 (44.34%), Postives = 125/221 (56.56%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVY--MQTYIGGVSC-PYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 864
            +KG V  VK+Q  CGSCW+FS TGALEG  F  TGKLVSLSEQ LVDC            + GCNGG M  AF+Y  + GGL  EE YPY   D    CK+      A+   F+VV+  +++     V   GP++VA++A +   Q Y  G+   P   S+ LDHGVL+VGYG  G          YW++KNSWG  WG NGY KI + + N CG+ +  S
Sbjct:  122 KKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRP-------QGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD--EICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEG---ANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAAS 330          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.003e-41
Identity = 90/206 (43.69%), Postives = 126/206 (61.17%), Query Frame = -1
Query:  253 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR 864
            +KGAV  VKDQG CGSCW+FST GA+EG N + TG L++LSEQ+LVDCD         S + GCNGGLM+ AFE+ +K GG+  ++DYPY G D G   +  K+    ++ ++  V    ++     V + P+++AI A     Q Y  G+     C  +LDHGV+ VGYG+          K YWI++NSWG+SWGE+GY ++ R
Sbjct:  145 KKGAVAEVKDQGGCGSCWAFSTIGAVEGINQIVTGDLITLSEQELVDCD--------TSYNEGCNGGLMDYAFEFIIKNGGIDTDKDYPYKGVD-GTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGI-FDGSCGTQLDHGVVAVGYGTE-------NGKDYWIVRNSWGKSWGESGYLRMAR 333          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.310e-41
Identity = 99/216 (45.83%), Postives = 122/216 (56.48%), Query Frame = -1
Query:  226 KGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSRR-LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDS 861
            K  V  VKDQ  CGSCW+FS TGALEG +FL   +LVSLSEQQLVDC  +         + GC GG M SAF+Y    GG+  E  YPY   DR  +C+FD + I A       V   E+ +   +   GP++VAI+A +   Q Y  GV     CS   LDHGVL VGYG+          K YW++KNSWG SWG+ GY K+ R R N CG+ S
Sbjct:  115 KALVTPVKDQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDCSTDYG-------NDGCGGGWMTSAFDYIKDNGGIDTESSYPYEAEDR--SCRFDANSIGAICTGSVEVQHTEEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCSPTFLDHGVLAVGYGTE-------STKDYWLVKNSWGSSWGDAGYIKMSRNRDNNCGIAS 314          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATV_NPVAH (Viral cathepsin OS=Adoxophyes honmai nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.310e-41
Identity = 90/214 (42.06%), Postives = 127/214 (59.35%), Query Frame = -1
Query:  208 VKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFS-VVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSR-RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIA 843
            VKDQG+CGSCW+ +  G LE    +    L++LSEQQL+DCD         S +  C+GGLM++AFE  + AGGLM E DYPY GT     CK D  K A SV++    +  +E+ +   L+  GP+A+AI+A  + TY  G+   + C    L+H VLLVGYG+ G          YW +KNSWG  WGE+GY+++ R  N CG+++ ++  A
Sbjct:  141 VKDQGACGSCWAHAAVGTLETLYAIKHNYLINLSEQQLIDCD---------SANMACDGGLMHTAFEQLMNAGGLMEEIDYPYQGTK--GVCKIDNKKFALSVSSCKRYIFQNEENLKKELITMGPIAMAIDAASISTYSKGII--HFCENLGLNHAVLLVGYGTEGGV-------SYWTLKNSWGSDWGEDGYFRVKRNINACGLNNQLAASA 334          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.710e-41
Identity = 97/216 (44.91%), Postives = 128/216 (59.26%), Query Frame = -1
Query:  232 KGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGS-CDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVY--MQTYIGGVSC-PYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGV 861
            KGAV  VKDQG CGSCW+FSTTG +EG +FL TG+LVSLSEQQLVDC         GS  + GCNGG +  A  Y    GG+  E  YPY   D  + C+F+ + I A+   +  ++   +       ++ GP++VAI+A +   Q+Y  GV   P   S +LDH VL VGYGS G        + +W++KNSW  SWGE+GY K+ R R N CG+
Sbjct:  114 KGAVTPVKDQGQCGSCWAFSTTGGIEGQHFLKTGRLVSLSEQQLVDC-------AGGSYYNQGCNGGWVERAIMYVRDNGGVDTESSYPYEARD--NTCRFNSNTIGATCTGYVGIAQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCSSSQLDHAVLAVGYGSEG-------GQDFWLVKNSWATSWGESGYIKMARNRNNNCGI 313          
The following BLAST results are available for this feature:
BLAST of CB293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
CATL1_CERAE2.639e-4245.00Cathepsin L1 OS=Cercopithecus aethiops GN=CTSL1 PE... [more]
CATL1_BOVIN2.639e-4245.00Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CATL1_CANFA3.446e-4245.45Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]
CPR1_ARATH4.501e-4243.24Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
CATL_DROME7.677e-4244.09Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATL2_HUMAN7.677e-4244.34Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
RD21A_ARATH1.003e-4143.69Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSP3_HOMAM1.310e-4145.83Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATV_NPVAH1.310e-4142.06Viral cathepsin OS=Adoxophyes honmai nucleopolyhed... [more]
CYSP1_HOMAM1.710e-4144.91Digestive cysteine proteinase 1 OS=Homarus america... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293896 ID=CB293896; Name=CB293896; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTTACACAAAGGAGTTCCACTTAATGACATAATTGAGACAT
TTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATGCATTGAGG
AAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAACATCCAATG
GACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCAGTCACGAA
CAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGACGTTGCGA
CCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCACCCCATGA
ATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGGAGCATAGC
CAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATCGCCTCGAG
CATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATGTACACGGC
ATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGCAGCAATTT
GATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGGCAGCAATC
TTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCGGTGTAAGG
ATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTACTCAAAAG
CACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAACCTGGTTCC
TCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCACTGAGGCT
CACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGCCCCTGTTG
TACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAACANGGCCT
ACAGCGCCCTTCTC
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