CB293896

Overview
NameCB293896
Unique NameCB293896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:492..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.731e-39
Identity = 89/220 (40.45%), Postives = 125/220 (56.82%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVYMQ--TYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 864
            EKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVDC  +         + GCNGG M  AF+Y +   G+  E  YPY  TD+   C++D    AA+ + ++ +    + +    V N GP+ V ++A +     Y  GV     C+++++HGVL++GYG        L  K YW++KNSWG ++GE GY ++ R + N CG+ S  S
Sbjct:  123 EKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSEKYG-------NKGCNGGFMTEAFQYIIDNKGIDSEASYPYKATDQ--KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVCVGVDASHPSFFLYRSGVYYDPACTQKVNHGVLVIGYGD-------LNGKEYWLVKNSWGSNFGEQGYIRMARNKGNHCGIASYPS 326          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 3.566e-39
Identity = 97/223 (43.50%), Postives = 125/223 (56.05%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSRR---LDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVS 864
            E G V  VKDQG CGSCW+FSTTG+LE A   ATGK VSLSEQQLVDC    +       + GC+GGL + AFEY    GGL  EE YPYTG +    C +    +   V    N ++ + DE + A  LV+  P++VA   +   + Y  GV     C      ++H VL VGYG            PYW+IKNSWG  WG+NGY+K+  G+N+CG+ +  S
Sbjct:  153 EDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDCATAYN-------NFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTGVN--GICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVR--PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVENGV-------PYWLIKNSWGADWGDNGYFKMEMGKNMCGIATCAS 357          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.566e-39
Identity = 92/220 (41.82%), Postives = 128/220 (58.18%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVYMQ--TYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR-GRNVCGVDSMVS 864
            EKG V  VK QGSCG+CW+FS  GALEG   L TGKL+SLS Q LVDC +E   E+ G  + GC GG M  AF+Y +  GG+  +  YPY  TD    C ++    AA+ + +  +   DED +   +   GP++V I+A +     Y  GV     C+  ++HGVL+VGYG+       L  K YW++KNSWG ++G+ GY ++ R  +N CG+ S  S
Sbjct:  131 EKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNE---EKYG--NKGCGGGYMTEAFQYIIDNGGIEADASYPYKATD--EKCHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDPSCTGNVNHGVLVVGYGT-------LDGKDYWLVKNSWGLNFGDQGYIRMARNNKNHCGIASYCS 336          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.566e-39
Identity = 91/218 (41.74%), Postives = 124/218 (56.88%), Query Frame = -1
Query:  217 VGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINA-----VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVS 852
            V  VK+QGSCGSCW+FSTTGALE A  +ATGK++SL+EQQLVDC    +       + GC GGL + AFEY     G+M E+ YPY G D    CKF   K  A V + + +++ DE+ +   +    P++ A        +Y +      SC +    +++H VL VGYG            PYWI+KNSWG  WG NGY+ I RG+N+CG+ +  S
Sbjct:  129 VSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQD--DHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSC-HKTPDKVNHAVLAVGYGEENGI-------PYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACAS 329          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.083e-39
Identity = 94/218 (43.12%), Postives = 128/218 (58.72%), Query Frame = -1
Query:  217 VGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVA--INAVYMQTYIGGVSCPYICSR---RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVS 852
            V  VK+QGSCGSCW+FSTTGALE A  +ATGKL  L+EQQLVDC    +       + GC GGL + AFEY     G+M E+ YPY G D    CK+  SK  A V + + ++L DE+ +   +  + P++ A  + A +M  Y  G+     C +   +++H VL VGYG         K  PYWI+KNSWG +WG  GY+ I RG+N+CG+ +  S
Sbjct:  129 VTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQDGD--CKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMM-YRKGIYSSTSCHKTPDKVNHAVLAVGYGEE-------KGIPYWIVKNSWGPNWGMKGYFLIERGKNMCGLAACAS 329          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.038e-38
Identity = 91/217 (41.94%), Postives = 123/217 (56.68%), Query Frame = -1
Query:  217 VGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICSR---RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVS 852
            V  VK+QG+C SCW+FSTTGALE A  +A+GK++SL+EQQLVDC    +       + GC GGL + AFEY L   G+M E+ YPY G D   +C+F+  K  A V N   ++L DE  +   +    P++ A         Y  GV     C +   +++H VL VGYG             YWI+KNSWG  WGENGY+ I RG+N+CG+ +  S
Sbjct:  127 VSPVKNQGACASCWTFSTTGALESAVAIASGKMLSLAEQQLVDCAQAFN-------NHGCKGGLPSQAFEYILYNKGIMEEDSYPYIGKD--SSCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDKVNHAVLAVGYGEQ-------NGLLYWIVKNSWGSQWGENGYFLIERGKNMCGLAACAS 327          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.355e-38
Identity = 99/224 (44.20%), Postives = 127/224 (56.70%), Query Frame = -1
Query:  232 KGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQ-IAAN-------LVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG----RNVCGV 861
            KGAV  VKDQG CGSCW+FST  ++EG N + TG+LVSLSEQ+LVDCD         S + GCNGGLM+ AFE+ ++  G+  E+ YPY   D            A+++ N  VVS+D  Q + AN        V N P++V+I A     Q Y  GV     C   LDHGV +VGYG+            YWI+KNSWGE WGE+GY ++ RG    R  CG+
Sbjct:  139 KGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCD--------TSYNEGCNGGLMDYAFEF-IQKNGITTEDSYPYAEQD---------GTCASNLLNSPVVSIDGHQDVPANNENALMQAVANQPISVSIEASGYGFQFYSEGVFTGR-CGTELDHGVAIVGYGAT------RDGTKYWIVKNSWGEEWGESGYIRMQRGISDKRGKCGI 337          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.355e-38
Identity = 92/220 (41.82%), Postives = 128/220 (58.18%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVYMQ--TYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 864
            EKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVD    C  E+ G  + GCNGG M +AF+Y +   G+  E  YPY   +    C++D  K AA+ + ++ +    ED +   +   GP++VAI+A +     Y  GV     C++ ++HGVL+VGYG+       L  K YW++KNSWG ++G+ GY ++ R   N CG+ S  S
Sbjct:  123 EKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFMTTAFQYIIDNNGIDSEASYPYKAMN--GKCRYDSKKRAATCSKYTELPFGSEDALKEAVANKGPVSVAIDASHYSFFLYRSGVYYEPSCTQNVNHGVLVVGYGN-------LNGKDYWLVKNSWGLNFGDQGYIRMARNSGNHCGIASYPS 327          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.770e-38
Identity = 99/221 (44.80%), Postives = 124/221 (56.11%), Query Frame = -1
Query:  217 GAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASV---ANFSVVSLDEDQIAANLVKNGPLAVAINAVY-MQTYIGGVSCPYICS---RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVS 858
            G V  VK QG CGSCW+FSTTGALE A   A GK +SLSEQQLVDC    +       + GCNGGL + AFEY    GGL  EE YPYTG  +   CKF ++ I   V    N ++ +  E + A  LV+  P++VA   V   + Y  GV     C      ++H VL VGYG            PYW+IKNSWG  WGE+GY+K+  G+N+CGV +  S
Sbjct:  149 GIVSPVKAQGKCGSCWTFSTTGALEAAYAQAFGKGISLSEQQLVDCAGAFN-------NFGCNGGLPSQAFEYIKFNGGLDTEEAYPYTG--KNGICKFSQANIGVKVISSVNITLGAEYELKYAVALVR--PVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVE-------NGTPYWLIKNSWGADWGEDGYFKMEMGKNMCGVATCAS 351          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CYSEP_PHAVU (Vignain OS=Phaseolus vulgaris PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.770e-38
Identity = 94/223 (42.15%), Postives = 127/223 (56.95%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDK-SKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYK----ICRGRNVCGVDSMVS 864
            +KGAV  VKDQG CGSCW+FST  A+EG N + T KLV+LSEQ+LVDCD E         + GCNGGLM SAFE+  + GG+  E +YPY   +    C   K + +A S+     V  +++      V N P++VAI+A     Q Y  GV     CS  L+HGV +VGYG+       +    YWI++NSWG  WGE+GY +    I +   +CG+  + S
Sbjct:  136 KKGAVTDVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVALSEQELVDCDKE--------ENQGCNGGLMESAFEFIKQKGGITTESNYPYKAQE--GTCDASKVNDLAVSIDGHENVPANDEDALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG-DCSTDLNHGVAIVGYGTT------VDGTNYWIVRNSWGPEWGEHGYIRMQRNISKKEGLCGIAMLPS 341          
The following BLAST results are available for this feature:
BLAST of CB293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
CATS_SAIBB2.731e-3940.45Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
ORYC_ORYSJ3.566e-3943.50Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATS_MOUSE3.566e-3941.82Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATH_PIG3.566e-3941.74Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATH_BOVIN6.083e-3943.12Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATH_MOUSE1.038e-3841.94Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
CYSP_HEMSP1.355e-3844.20Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CATS_CANFA1.355e-3841.82Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CYSP3_SOLLC1.770e-3844.80Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CYSEP_PHAVU1.770e-3842.15Vignain OS=Phaseolus vulgaris PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06de08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293896 ID=CB293896; Name=CB293896; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTTACACAAAGGAGTTCCACTTAATGACATAATTGAGACAT
TTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATGCATTGAGG
AAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAACATCCAATG
GACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCAGTCACGAA
CAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGACGTTGCGA
CCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCACCCCATGA
ATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGGAGCATAGC
CAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATCGCCTCGAG
CATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATGTACACGGC
ATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGCAGCAATTT
GATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGGCAGCAATC
TTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCGGTGTAAGG
ATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTACTCAAAAG
CACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAACCTGGTTCC
TCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCACTGAGGCT
CACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGCCCCTGTTG
TACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAACANGGCCT
ACAGCGCCCTTCTC
back to top