CB293896

Overview
NameCB293896
Unique NameCB293896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:492..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 6.295e-36
Identity = 92/221 (41.63%), Postives = 122/221 (55.20%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYICS-RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKN-SWGESWGENGYYKICRG-RNVCGVDSMVS 864
            EKG +  VKDQG CGSCW+FS TGALEG  F  TGKL+SL+EQ LVDC     P+     + GCNGG M++ F Y  + GGL  E  YPY G  +   C+++    AA+   F  +   E  +A  +   GP++VA  A  V  Q Y  G+     C    LDH +LLVGY    Y         YW++KN S G++WG +GY K+ +  RN CG+ +  S
Sbjct:   65 EKGYMTPVKDQGQCGSCWAFSATGALEGQMFWKTGKLISLNEQNLVDCS---GPQG----NEGCNGGFMDNPFRYVQENGGLDSEASYPYEG--KVKTCRYNPKYSAANDTGFVDIPSQEKDLAKAVATVGPISVAAGASHVSFQFYKKGIYFEPRCDPEGLDHAMLLVGY---SYEGADSDNNKYWLVKNSSEGKNWGMDGYIKMAKDRRNNCGIATAAS 273          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.074e-35
Identity = 85/213 (39.91%), Postives = 117/213 (54.93%), Query Frame = -1
Query:  232 GAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVY--MQTYIGGVSCPYICSR-RLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG-RNVCGV 858
            G V  VK+QG C S W+FS TG+LEG  F  T +L+ LSEQ L+DC          +   GC+GG M  AF+Y    GGL  EE YPY G  +G  C++     AA+V +F  +   E+ +   + K GP++VA++A +   Q Y  G+     C R  L+H VL+VGYG  G          +W++KNSWGE WG  GY K+ +   N CG+
Sbjct:  124 GYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDC-------MGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRG--QGRECRYHAENSAANVRDFVQIPGSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKRVHLNHAVLVVGYGFEGE---ESDGNSFWLVKNSWGEEWGMKGYMKLAKDWSNHCGI 324          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATK_CANFA (Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.074e-35
Identity = 91/221 (41.18%), Postives = 122/221 (55.20%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 864
            +KG V  VK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E D         GC GG M +AF+Y  K  G+  E+ YPY G D   +C ++ +  AA    +  +   +E  +   + + GP++VAI+A     Q Y  GV     C S  L+H VL VGYG         K   +WIIKNSWGE+WG  GY  + R + N CG+ ++ S
Sbjct:  124 KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQD--ESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYSKGVYYDENCNSDNLNHAVLAVGYGIQ-------KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 326          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.402e-35
Identity = 87/215 (40.47%), Postives = 118/215 (54.88%), Query Frame = -1
Query:  232 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAINAVYMQ--TYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGV 864
            EKG V  VK QG+CGSCW+FS  GALE    L TGKLVSLS Q LVDC            + GCNGG M  AF+Y +   G+  E  YPY   D    C++D    AA+ + +  +    ++     V N GP++V I+A +     Y  GV     C++ ++HGVL+VGYG+       L  K YW++KNSWG  +G+ GY ++ R   N CG+
Sbjct:  123 EKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDC------STAKYGNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAMD--GKCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSCTQNVNHGVLVVGYGN-------LDGKDYWLVKNSWGLHFGDQGYIRMARNSGNHCGI 322          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.402e-35
Identity = 91/220 (41.36%), Postives = 119/220 (54.09%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLV-KNGPLAVAINAVY-MQTYIGGVSCPYICS-RRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 864
            E G V  VKDQG+CGSCW+FSTTG +EG         +S SEQQLVDC            ++GC+GGLM +A++Y LK  GL  E  YPYT  +    C+++K    A V  +  V    +    NLV    P AVA++       Y  G+     CS  R++H VL VGYG+ G          YWI+KNSWG  WGE GY ++ R R N+CG+ S+ S
Sbjct:  116 ESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSGPWG-------NNGCSGGLMENAYQY-LKQFGLETESSYPYTAVE--GQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMMYRSGIYQSQTCSPLRVNHAVLAVGYGTQG-------GTDYWIVKNSWGTYWGERGYIRMARNRGNMCGIASLAS 318          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CPGP2_ZINOF (Zingipain-2 OS=Zingiber officinale PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.832e-35
Identity = 85/222 (38.29%), Postives = 119/222 (53.60%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAV--YMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRG----RNVCGVDSMVS 864
            E GAV  VK+QG CGSCW+FST  A+EG N + TG L+SLSEQQLVDC          + + GC GG MN AF++ +  GG+  EE YPY G D    C    +    S+ ++  V    +Q     V N P++V ++A     Q Y  G+     C+   +H + +VGYG+         +K +WI+KNSWG++WGE+GY +  R        CG+    S
Sbjct:   11 ENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCT---------TANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQD--GICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG-SCNISANHALTVVGYGTE-------NDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFAS 213          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.832e-35
Identity = 78/216 (36.11%), Postives = 124/216 (57.41%), Query Frame = -1
Query:  208 VGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGRNVCGVDSMVSTIA 852
            V  VK+QG CG+CW+F+T G+LE    +   +L++LSEQQ++DCD           D+GCNGGL+++AFE  +K GG+  E DYPY   +    C+ + +K    V + +  + + E+++   L   GP+ +AI+A  +  Y  G+   Y     L+H VLLVGYG            PYW  KN+WG  WGE+G++++ +  N CG+ + +++ A
Sbjct:  124 VTSVKNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMIDCDF---------VDAGCNGGLLHTAFEAIIKMGGVQLESDYPYEADNNN--CRMNSNKFLVQVKDCYRYIIVYEEKLKDLLPLVGPIPMAIDAADIVNYKQGI-IKYCFDSGLNHAVLLVGYGVE-------NNIPYWTFKNTWGTDWGEDGFFRVQQNINACGMRNELASTA 320          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.832e-35
Identity = 91/221 (41.18%), Postives = 122/221 (55.20%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAINAVYMQT---YIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR-GRNVCGVDSMVS 864
            EKG V  VK QGSCGSCW+FS  GALEG   L TGKLVSLS Q LVDC  E   E+ G  + GC GG M  AF+Y +    +  E  YPY   D    C +D    AA+ + +  +   DE+ +   +   GP++V I+     +   Y  GV     C+  ++HGVL+VGYG+       L  K YW++KNSWG  +G+ GY ++ R  +N CG+ S  S
Sbjct:  121 EKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTE---EKYG--NKGCGGGFMTEAFQYIIDT-SIDSEASYPYKAMD--EKCLYDPKNRAATCSRYIELPFGDEEALKEAVATKGPVSVGIDDASHSSFFLYQSGVYDDPSCTENMNHGVLVVGYGT-------LDGKDYWLVKNSWGLHFGDQGYIRMARNNKNHCGIASYCS 326          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CATK_BOVIN (Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.832e-35
Identity = 91/221 (41.18%), Postives = 121/221 (54.75%), Query Frame = -1
Query:  217 EKGAVGXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAINA--VYMQTYIGGVSCPYIC-SRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICRGR-NVCGVDSMVS 864
            +KG V  VK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E D         GC GG M +AF+Y  K  G+  E+ YPY G D    C ++ +  AA    +  +   +E  +   + + GP++VAI+A     Q Y  GV     C S  L+H VL VGYG         K   +WIIKNSWGE+WG  GY  + R + N CG+ ++ S
Sbjct:  123 KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND---------GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQDEN--CMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPISVAIDASLTSFQFYRKGVYYDENCNSDNLNHAVLAVGYGIQ-------KGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 325          
BLAST of CB293896 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.392e-35
Identity = 86/207 (41.55%), Postives = 119/207 (57.49%), Query Frame = -1
Query:  253 EKGAV-GXVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKI--AASVANFSVVSLDEDQIAANLVKNGPLAVAINAVYMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRLKEKPYWIIKNSWGESWGENGYYKICR 864
            E+GAV   VK QG CGSCW+F+ TGA+EG N + TG+LVSLSEQ+L+DCD        G+ + GC GG    AFE+  + GG++ +E Y YTG D   ACK  + K     ++    VV ++++      V   P++V I+A  M  Y  GV      +   DH VL+VGYG++        E  YW+I+NSWG  WGE GY ++ R
Sbjct:  135 ERGAVVPRVKRQGECGSCWAFAATGAVEGINQITTGELVSLSEQELIDCDR-------GNDNFGCAGGGAVWAFEFIKENGGIVSDEVYGYTGEDTA-ACKAIEMKTTRVVTINGHEVVPVNDEMSLKKAVAYQPISVMISAANMSDYKSGVYKGACSNLWGDHNVLIVGYGTSS------DEGDYWLIRNSWGPEWGEGGYLRLQR 327          
The following BLAST results are available for this feature:
BLAST of CB293896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
CATL6_HUMAN6.295e-3641.63Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
TEST2_RAT1.074e-3539.91Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATK_CANFA1.074e-3541.18Cathepsin K OS=Canis familiaris GN=CTSK PE=2 SV=1[more]
CATS_BOVIN1.402e-3540.47Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATLL_FASHE1.402e-3541.36Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CPGP2_ZINOF1.832e-3538.29Zingipain-2 OS=Zingiber officinale PE=1 SV=1[more]
CATV_NPVBM1.832e-3536.11Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATS_RAT1.832e-3541.18Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
CATK_BOVIN1.832e-3541.18Cathepsin K OS=Bos taurus GN=CTSK PE=2 SV=2[more]
CPR2_ARATH2.392e-3541.55Probable cysteine proteinase At3g43960 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de08_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293896 ID=CB293896; Name=CB293896; organism=Citrus sinensis; type=EST; length=864bp
TTTTTTTTTTTTACACAAAGGAGTTCCACTTAATGACATAATTGAGACAT
TTCAGTTTGACACCCAGATGCAATAAGAAATCATTTCTTATGCATTGAGG
AAATTGTTTCAACATTAAAGTCGCATGCTTTATATACAAAACATCCAATG
GACCTGTATCTGCTACTATAACCTACTCCTTACTTGGAGTCAGTCACGAA
CAGCAGCAGCTATGGTCGAAACCATGGAATCGACTCCACAGACGTTGCGA
CCCCTGCATATTTTGTAGTATCCGTTCTCTCCCCAGCTCTCACCCCATGA
ATTCTTGATGATCCAGTATGGCTTCTCCTTCAACCTGATTGGAGCATAGC
CAGCTGAACCGTATCCCACGAGCAACACTCCATGGTCCAATCGCCTCGAG
CATATGTATGGGCAGGAAACTCCCCCAATGTATGTCTGCATGTACACGGC
ATTGATGGCCACTGCAAGGGGACCATTTTTCACAAGATTGGCAGCAATTT
GATCCTCATCAAGGGAGACAACACTGAAGTTGGCCACTGAGGCAGCAATC
TTACTCTTATCGAATTTGCAGGCGTGGCCACGATCAGTGCCGGTGTAAGG
ATAGTCTTCCTCCCGCATAAGCCCACCAGCCTTGAGTGTGTACTCAAAAG
CACTGTTCATAAGCCCACCATTGCATCCAGAATCACAAGAACCTGGTTCC
TCAGGATCACACTCATGATCGCAATCCACAAGCTGTTGCTCACTGAGGCT
CACAAGCTTTCCAGTTGCCAGGAAGTTAGCACCTTCCAAGGCCCCTGTTG
TACTGAAACTCCAGCATGATCCGCATGAACCCTGATCTTTAACANGGCCT
ACAGCGCCCTTCTC
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