CB293897

Overview
NameCB293897
Unique NameCB293897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:31..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.675e-24
Identity = 68/187 (36.36%), Postives = 97/187 (51.87%), Query Frame = 3
Query:  186 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLD-PSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWRE-KGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTG 737
            F+LF+ ++N++Y++ EE+ RR  IF  NL +A + ++ D  +A  GVT FSDLT  EF R Y   R     PK   +       + +P   DWR+  G +  VK Q SC  CW+ +  G +E    +   + V LS Q+L+DC         G C  GC GG +  AF   L   GL  E+DYP+ G
Sbjct:   42 FTLFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEEEDLGTAEFGVTPFSDLTEEEFGRLYGHRRMDGEAPKVGREVGSEEWGESVPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDC---------GRCGDGCRGGFVWDAFITVLNNSGLASEKDYPFQG 219          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.650e-23
Identity = 66/187 (35.29%), Postives = 96/187 (51.34%), Query Frame = 3
Query:  195 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTD 743
            +K K+ K+Y+  EE  +R  +++ NL+      K +    +G T     F+D T  EFR++   +     +   + Q  +  +  LP   DWR++G V PV++QG CGSCW+F+  GA+EG  F  TG L  LS Q L+DC            ++GC  G  + AF Y LK  GL  E  YPY G D
Sbjct:   32 WKTKYAKSYSPVEEELKR-AVWEENLKMIQLHNKENGLGKNGFTMEMNAFADTTGEEFRKSLSDILIPAAVTNPSAQKQV--SIGLPNFKDWRKEGYVTPVRNQGKCGSCWAFAAVGAIEGQMFSKTGNLTPLSVQNLLDC-------SKSEGNNGCRWGTAHQAFNYVLKNKGLEAEATYPYEGKD 208          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: ERVB_TABDI (Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.155e-23
Identity = 49/99 (49.49%), Postives = 67/99 (67.68%), Query Frame = 3
Query:  438 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYT 734
            LP+  DWR KGAV  +K+Q  CGSCW+FS   A+E  N + TG+L+SLSEQ+LVDCD         +   GCNGG MN+AF+Y +  GG+  +++YPY+
Sbjct:    1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCD---------TASHGCNGGWMNNAFQYIITNGGIDTQQNYPYS 90          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATK_RABIT (Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.676e-23
Identity = 68/191 (35.60%), Postives = 95/191 (49.74%), Query Frame = 3
Query:  186 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTD 743
            + L+KK ++K Y S+ +   R  I++ NL+  +          H     +    D+T  E  +   GL+         D   I       P   D+R+KG V PVK+QG CGSCW+FS+ GALEG     TGKL++LS Q LVDC  E         + GC GG M +AF+Y  +  G+  E+ YPY G D
Sbjct:   26 WELWKKTYSKQYNSKVDEISRRLIWEKNLKHISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPPSRSHSNDTLYIPDWEGRTPDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE---------NYGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQD 207          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATK_CHICK (Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.801e-23
Identity = 63/137 (45.99%), Postives = 76/137 (55.47%), Query Frame = 3
Query:  336 DLTPAEFRRTYLGLRRKLRLPKDADQAPILP-TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTD 743
            D+T  E  RT  GLR     P+      +   ++  PA  DWR KG V PVKDQG CGSCW+FS+ GALEG     TGKL+SLS Q LV C          S ++GC GG M +AFEY     G+  E+ YPY G D
Sbjct:   85 DMTSEEVVRTMTGLRVPRSRPRPNGTLYVPDWSSRAPAAVDWRRKGYVTPVKDQGQCGSCWAFSSVGALEGQLKRRTGKLLSLSPQNLVYC---------VSNNNGCGGGYMTNAFEYVRLNRGIDSEDAYPYIGQD 212          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.271e-23
Identity = 72/190 (37.89%), Postives = 92/190 (48.42%), Query Frame = 3
Query:  195 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKL--RLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDR 746
            ++ K  KAY   EE  RR  +++ N +             H  T     F DLT  EF +   G RR+   R+    D   +     +P   DWR  G V PVK+QG C S W+FS TG+LEG  F  TG+LV LSEQ L+DC          +    C+GG M +AF+Y    GGL  EE YPY G  R
Sbjct:   32 WRTKHGKAYNVNEERLRR-AVWEKNFKMIELHNWEYLEGKHDFTMTMNAFGDLTNTEFVKMMTGFRRQKIKRMHVFQDHQFLY----VPKYVDWRMLGYVTPVKNQGYCASSWAFSATGSLEGQMFKKTGRLVPLSEQNLLDC-------MGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPYIGPGR 209          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: ACP1_ENTHI (Cysteine proteinase ACP1 OS=Entamoeba histolytica GN=ACP1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.070e-22
Identity = 64/182 (35.16%), Postives = 95/182 (52.20%), Query Frame = 3
Query:  186 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 731
            F  +    NK +A++ E+  RF +F  N      ++ ++ +A   +  F+D+T  EF +T+LG+  ++       +A +      P   DWR    + P KDQG CGSCW+F TT  LEG      GKL S SEQQLVDCD         + D+GC GG  +++ ++  +  GL  E DYPY
Sbjct:   18 FKQWAATHNKVFANRAEYLYRFAVFLDN------KKFVEANANTELNVFADMTHEEFIQTHLGMTYEVPETTSNVKAAVKAA---PESVDWRS--IMNPAKDQGQCGSCWTFCTTAVLEGRVNKDLGKLYSFSEQQLVDCD---------ASDNGCEGGHPSNSLKFIQENNGLGLESDYPY 179          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 65/187 (34.76%), Postives = 97/187 (51.87%), Query Frame = 3
Query:  186 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLD-PSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWRE-KGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTG 737
            F LF+ +FN++Y +  E+ RR +IF  NL +A R Q+ D  +A  G T FSDLT  EF + Y   R   R P    +       + +P   DWR+ K  +  VK+QGSC  CW+ +    ++    +   + V +S Q+L+DC+          C +GCNGG +  A+   L   GL  E+DYP+ G
Sbjct:   40 FKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGTAEFGETPFSDLTEEEFGQLYGQERSPERTPNMTKKVESNTWGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCER---------CGNGCNGGFVWDAYLTVLNNSGLASEKDYPFQG 217          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 68/186 (36.56%), Postives = 96/186 (51.61%), Query Frame = 3
Query:  228 QEEHDRRFTIFKANLRRAARRQKLDP----SATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---------LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDR 746
            Q+E++ R  IF++N     R  K       S T  +   +DLT  EF      +R  LRLP   D      T++         LP   DWR KGAV PV++QG CGSC++F+T  ALE  +   TG+L+ LS Q +VDC            ++GC+GG M +AF+Y  +  G+  E  YPY GT++
Sbjct:  104 QKENNFRMAIFESNELMTERINKKYEQGLVSYTTALNDLADLTDEEFM-----VRNGLRLPNQTDLRGKRQTSEFYRYDKSERLPDQVDWRTKGAVTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLG-------NNGCSGGYMPTAFQYASRY-GIAMESRYPYVGTEQ 276          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: ERVC_TABDI (Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 3
Query:  438 LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 731
            LP   DWR+KGAV PVK+QGSCGSCW+FST   +E  N + TG L+SLSEQ+LVDCD +         + GC GG    A++Y +  GG+  + +YPY
Sbjct:    1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK---------NHGCLGGAFVFAYQYIINNGGIDTQANYPY 89          
The following BLAST results are available for this feature:
BLAST of CB293897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
CATW_FELCA9.675e-2436.36Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
CATJ_RAT1.650e-2335.29Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
ERVB_TABDI2.155e-2349.49Ervatamin-B OS=Tabernaemontana divaricata PE=1 SV=... [more]
CATK_RABIT3.676e-2335.60Cathepsin K OS=Oryctolagus cuniculus GN=CTSK PE=1 ... [more]
CATK_CHICK4.801e-2345.99Cathepsin K OS=Gallus gallus GN=CTSK PE=2 SV=1[more]
TEST2_MOUSE6.271e-2337.89Testin-2 OS=Mus musculus PE=2 SV=1[more]
ACP1_ENTHI1.070e-2235.16Cysteine proteinase ACP1 OS=Entamoeba histolytica ... [more]
CATW_MOUSE1.397e-2234.76Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATL_BRUPA1.397e-2236.56Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
ERVC_TABDI2.383e-2250.00Ervatamin-C OS=Tabernaemontana divaricata PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293897 ID=CB293897; Name=CB293897; organism=Citrus sinensis; type=EST; length=748bp
GCACTAGGATGGGATCTAAAACAGTAGTTTTCTTTCTGGTCTCTCTCGTC
GTCGTCTCCGCCGTTTCATCAGGGACGTTGATCGACGATGTTGATCAGCT
GATCAGGCAAGTAACGGACGGCGGTGACGAGATCCTAAGCCACCACGAGA
GCACCAACAACGACCTCTTGGGCGCAGAGCACCACTTCTCCCTATTCAAG
AAGAAGTTCAATAAAGCGTACGCTTCGCAGGAGGAGCACGACCGTAGGTT
CACTATTTTCAAGGCCAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCG
ACCCGAGCGCCACCCACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCC
GAGTTCCGCCGGACGTACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAA
GGATGCGGATCAGGCGCCGATCTTGCCTACGAATGATTTGCCGGCGGATT
TTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCA
TGCGGATCATGCTGGAGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAA
CTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGG
ATTGCGATCATGAGTGTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGA
TGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTACACACTCAAGGCTGG
TGGGCTTATGCGGGAGGAAGACTATCCTTACACCGGCACTGATCGTGG
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