CB293897

Overview
NameCB293897
Unique NameCB293897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length748
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1496 contig Csv1_Contig1496:31..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22
Identity = 67/193 (34.72%), Postives = 97/193 (50.26%), Query Frame = 3
Query:  195 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVT----QFSDLTPAEFRRTYLGL------RRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTD 743
            +K K+NK+Y+ +EE  +R  +++  L+      + +    +G T    +F D T  EFR+  + +        K  + ++A          LP   DWR+KG V PV+ QG C +CW+F+ TGA+E      TGKL  LS Q LVDC            ++GC GG   +AF+Y L  GGL  E  YPY G D
Sbjct:   32 WKIKYNKSYSLKEEKLKR-VVWEEKLKMIKLHNRENSLGKNGFTMKMNEFGDQTDEEFRKMMIEISVWTHREGKSIMKREAGSI-------LPKFVDWRKKGYVTPVRRQGDCDACWAFAVTGAIEAQAIWQTGKLTPLSVQNLVDCSKP-------QGNNGCLGGDTYNAFQYVLHNGGLESEATYPYEGKD 209          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: MEX2_JACME (Chymomexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.065e-22
Identity = 47/97 (48.45%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  441 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 731
            P   DWR+KGAV PVK+Q  CGSCW+FST   +EG N + TGKL+SLSEQ+L+DCD             GC GG    + +Y    GG+  E++YPY
Sbjct:    2 PESIDWRDKGAVTPVKNQNPCGSCWAFSTVATVEGINKIRTGKLISLSEQELLDCDRR---------SHGCKGGYQTGSIQYVADNGGVHTEKEYPY 89          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 68/189 (35.98%), Postives = 90/189 (47.62%), Query Frame = 3
Query:  195 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRR-KLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDR 746
            ++ K  K Y   EE  +R  +++ N +             H  T     F DLT  EF +   G +R K++          L    +P   DWR+ G V PVK+QG C S W+FS TG+LEG  F  T +L+ LSEQ L+DC          +   GC+GG M  AF+Y    GGL  EE YPY G  R
Sbjct:   32 WRTKHGKTYNMNEERLKR-AVWEKNFKMIELHNWEYLEGRHDFTMAMNAFGDLTNIEFVKMMTGFQRQKIKKTHIFQDHQFLY---VPKRVDWRQLGYVTPVKNQGHCASSWAFSATGSLEGQMFRKTERLIPLSEQNLLDC-------MGSNVTHGCSGGFMQYAFQYVKDNGGLATEESYPYRGQGR 209          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATM_MOUSE (Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.635e-21
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 3
Query:  195 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTD 743
            +K K+ KAY+ +EE  +R  +++ N+++       +    HG T     F D+T  EFR+  + +   +   K         + +LP   +W+++G V PV+ QG C SCW+FS TGA+EG  F  TG+L+ LS Q LVDC            + GC  G    A  Y ++ GGL  E  YPY   D
Sbjct:   32 WKIKYGKAYSLEEEGQKR-AVWEDNMKKIKLHNGENGLGKHGFTMEMNAFGDMTLEEFRKVMIEI--PVPTVKKGKSVQKRLSVNLPKFINWKKRGYVTPVQTQGRCNSCWAFSVTGAIEGQMFRKTGQLIPLSVQNLVDCSRP-------QGNWGCYLGNTYLALHYVMENGGLESEATYPYEEKD 208          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: MEX1_JACME (Mexicain OS=Jacaratia mexicana PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  441 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 731
            P   DWREKGAV PVK+Q  CGSCW+FST   +EG N + TG+L+SLSEQ+L+DC++            GC+GG    + +Y +   G+  E +YPY
Sbjct:    2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCEYR---------SHGCDGGYQTPSLQYVVD-NGVHTEREYPY 88          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.489e-20
Identity = 67/193 (34.72%), Postives = 96/193 (49.74%), Query Frame = 3
Query:  195 FKKKFNKAYASQEEHDRRFTIFKANLRRAA---RRQKLDPSA-THGVTQFSDLTPAEFRRTYLGLRRKL-----RLPKDADQAPILPTN-----DLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 731
            +K K+ K Y+ +EE  +R  +++ N+++     R   L  +  T  +  F+D+T  EF+   +G +  +     RL K A      P +      LP   DWR +G V  V+ QG C SCW+F  TGA+EG  F  TGKL+ LS Q L+DC            + GC  G   +AF+Y L  GGL  E  YPY
Sbjct:   32 WKIKYEKLYSPEEEVLKR-VVWEENVKKIELHNRENSLGKNTYTMEINDFADMTDEEFKDMIIGFQLPVHNTEKRLWKRA-LGSFFPNSWNWRDALPKFVDWRNEGYVTRVRKQGGCSSCWAFPVTGAIEGQMFKKTGKLIPLSVQNLIDCSKP-------QGNRGCLWGNTYNAFQYVLHNGGLEAEATYPY 215          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CPP1_ENTHI (Cysteine proteinase 1 OS=Entamoeba histolytica GN=CPP1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.371e-19
Identity = 59/181 (32.60%), Postives = 91/181 (50.28%), Query Frame = 3
Query:  210 NKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTD 743
            N  + +  E  RR  IF  N R  A   + +         F+ +T  E+  + L L+R      +     I      P   DWR+KG V P++DQG+CGSC++F +  ALEG   +  G   + + LSE+ +V C  E         ++GCNGGL ++ + Y ++  G+ +E DYPYTG+D
Sbjct:   23 NNKHFTAVESLRRRAIFNMNARIVAENNRKETFKLSVDGPFAAMTNEEYN-SLLKLKRSGEEKGEVRYLNI----QAPKAVDWRKKGKVTPIRDQGNCGSCYTFGSIAALEGRLLIEKGGDSETLDLSEEHMVQCTRE-------DGNNGCNGGLGSNVYNYIME-NGIAKESDYPYTGSD 190          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.561e-18
Identity = 61/189 (32.28%), Postives = 93/189 (49.21%), Query Frame = 3
Query:  186 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTD 743
            F+ +    NK + + E   RR  IF  N R  A   K           F+ +T  E+R     L +  R  ++  +   L     P   DWR +G V P++DQ  CGSC++F +  ALEG   +  G     + LSE+ LV C  +       + ++GCNGGL ++ ++Y ++  G+ +E DYPYTGTD
Sbjct:    9 FNTWAANNNKHFTAVEALRRR-AIFNMNARFVAEFNKKGSFKLSVDGPFAAMTNEEYRT----LLKSKRTVEENGKVTYLNIQ-APESVDWRAQGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGNANTLDLSEEHLVQCTRD-------NGNNGCNGGLGSNVYDYIIQ-NGVAKESDYPYTGTD 183          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CPP2_ENTHI (Cysteine proteinase 2 OS=Entamoeba histolytica GN=CPP2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.561e-18
Identity = 59/189 (31.22%), Postives = 96/189 (50.79%), Query Frame = 3
Query:  186 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG---KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTD 743
            F+ +  K NK + + E+  RR  IF  N +      K+          F+ +T  E+R     L +  R  ++  Q   L     P   DWR++G V P++DQ  CGSC++F +  ALEG   +  G     + LSE+ +V C  +       + ++GCNGGL ++ ++Y ++  G+ +E DYPYTG+D
Sbjct:   16 FNTWASKNNKHFTAIEKLRRR-AIFNMNAKFVDSFNKIGSFKLSVDGPFAAMTNEEYRT----LLKSKRTTEENGQVKYLNIQ-APESVDWRKEGKVTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGDANTLDLSEEHMVQCTRD-------NGNNGCNGGLGSNVYDYIIE-HGVAKESDYPYTGSD 190          
BLAST of CB293897 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.561e-18
Identity = 57/169 (33.73%), Postives = 83/169 (49.11%), Query Frame = 3
Query:  240 DRRFTIFKANLRRAARRQKLDPS----ATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAG-GLMREEDYPY 731
            +R    F+ +L R      L PS    A +G+ QFS L P EF+  YL  +        A+    +P   LP  FDWR+K  V  V++Q  CG CW+FS  GA+E A  +    L  LS QQ++DC +          + GCNGG   +A  +  K    L+++ +YP+
Sbjct:   38 EREAAAFRESLNRHRYLNSLFPSENSTAFYGINQFSYLFPEEFKAIYLRSKPSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCSYN---------NYGCNGGSTLNALNWLNKMQVKLVKDSEYPF 197          
The following BLAST results are available for this feature:
BLAST of CB293897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
CATR_MOUSE3.112e-2234.72Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
MEX2_JACME4.065e-2248.45Chymomexicain OS=Jacaratia mexicana PE=1 SV=1[more]
TEST2_RAT9.055e-2235.98Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
CATM_MOUSE2.635e-2133.69Cathepsin M OS=Mus musculus GN=Ctsm PE=2 SV=1[more]
MEX1_JACME3.804e-2046.39Mexicain OS=Jacaratia mexicana PE=1 SV=1[more]
CATQ_RAT6.489e-2034.72Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CPP1_ENTHI9.371e-1932.60Cysteine proteinase 1 OS=Entamoeba histolytica GN=... [more]
CPP3_ENTHI3.561e-1832.28Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
CPP2_ENTHI3.561e-1831.22Cysteine proteinase 2 OS=Entamoeba histolytica GN=... [more]
CATO_HUMAN3.561e-1833.73Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06de08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293897 ID=CB293897; Name=CB293897; organism=Citrus sinensis; type=EST; length=748bp
GCACTAGGATGGGATCTAAAACAGTAGTTTTCTTTCTGGTCTCTCTCGTC
GTCGTCTCCGCCGTTTCATCAGGGACGTTGATCGACGATGTTGATCAGCT
GATCAGGCAAGTAACGGACGGCGGTGACGAGATCCTAAGCCACCACGAGA
GCACCAACAACGACCTCTTGGGCGCAGAGCACCACTTCTCCCTATTCAAG
AAGAAGTTCAATAAAGCGTACGCTTCGCAGGAGGAGCACGACCGTAGGTT
CACTATTTTCAAGGCCAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCG
ACCCGAGCGCCACCCACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCC
GAGTTCCGCCGGACGTACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAA
GGATGCGGATCAGGCGCCGATCTTGCCTACGAATGATTTGCCGGCGGATT
TTGATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCA
TGCGGATCATGCTGGAGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAA
CTTCCTGGCAACTGGAAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGG
ATTGCGATCATGAGTGTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGA
TGCAATGGTGGGCTTATGAACAGTGCTTTTGAGTACACACTCAAGGCTGG
TGGGCTTATGCGGGAGGAAGACTATCCTTACACCGGCACTGATCGTGG
back to top