CB293898

Overview
NameCB293898
Unique NameCB293898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 78/112 (69.64%), Postives = 80/112 (71.43%), Query Frame = -3
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KG G GAEIIGTFV VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+NKD  WDD W+FW               VVIRAIPFK R
Sbjct:  174 KGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFKSR 285          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 73/109 (66.97%), Postives = 79/109 (72.48%), Query Frame = -3
Query:  334 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPF 660
            KGDG GAEIIGTFV VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AII+N +  W+D WIFW              Q++IRA+PF
Sbjct:  175 KGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRAMPF 283          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 73/112 (65.18%), Postives = 80/112 (71.43%), Query Frame = -3
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KGDG GAEI+GTFV VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AI++N+   W+D WIFW               V+IRA+PFK R
Sbjct:  176 KGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFKSR 287          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 75/112 (66.96%), Postives = 79/112 (70.54%), Query Frame = -3
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KGDG GAEI+GTFV VYTVF A DAKR ARD HVPILAPLPIGFA FLV L  IPITGTGINPARS G AI++N+   W D WIFW               VVIRAIPFK R
Sbjct:  176 KGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFKSR 287          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 73/112 (65.18%), Postives = 80/112 (71.43%), Query Frame = -3
Query:  325 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK*R 660
            KGDG GAEI+GTF+ VYTVF A DAKRRARD HVPILAPLPIGFA FLV L  + ITGTGINPARS G A+I+N+   W D WIFW              QV+IRAIPFK R
Sbjct:  175 KGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFKSR 286          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.842e-34
Identity = 72/110 (65.45%), Postives = 77/110 (70.00%), Query Frame = -3
Query:  331 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK 660
            KGDG GAE++GTFV VYTVF A DAKR ARD HVP LAPLPIGFA FLV L  IPITGTGINPARS G AII++   GW   WIFW              QVV+RAIPFK
Sbjct:  182 KGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFK 291          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.406e-33
Identity = 68/110 (61.82%), Postives = 76/110 (69.09%), Query Frame = -3
Query:  331 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK 660
            KG G GAEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IPITGTGINPARSFG A+I+N ++ WDD WIFW              Q ++RA   K
Sbjct:  167 KGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIK 276          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP1_ATRCA (Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.406e-33
Identity = 71/110 (64.55%), Postives = 76/110 (69.09%), Query Frame = -3
Query:  331 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK 660
            KG  FGAE+IGTFV VYTVF A D KR ARD HVPILAPLPIGFA F+V L  IPITGTGINPARSFG A+I+NK R WDD WIFW              Q V+RA   K
Sbjct:  162 KGTAFGAELIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKKRVWDDHWIFWVGPFVGALAAAAYHQYVLRAAAIK 271          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.104e-33
Identity = 68/106 (64.15%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  343 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRA 660
            KG G GAEIIGTFV VYTVF A D KR ARD H+P+LAPLPIGFA F+V L  IPITGTGINPARS G A+I+NKD+ WDD WIFW              Q V+RA
Sbjct:  171 KGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 276          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.194e-32
Identity = 68/106 (64.15%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  343 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRA 660
            KG G  AEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IPITGTGINPARS G A+I+NKD+ WDD WIFW              Q V+RA
Sbjct:  171 KGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 276          
The following BLAST results are available for this feature:
BLAST of CB293898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP11_ARATH7.991e-3769.64Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP1_SOLLC1.968e-3566.97Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP15_MAIZE2.571e-3565.18Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP13_ORYSJ2.571e-3566.96Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP11_MAIZE5.727e-3565.18Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP16_MAIZE2.842e-3465.45Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP24_ARATH2.406e-3361.82Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP1_ATRCA2.406e-3364.55Aquaporin PIP-type OS=Atriplex canescens PE=2 SV=1[more]
PIP22_ORYSJ4.104e-3364.15Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP24_MAIZE1.194e-3264.15Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293898 ID=CB293898; Name=CB293898; organism=Citrus sinensis; type=EST; length=662bp
TTTTTTTTTTTTTTTTTCTTAAAGAAAAAAAACTAGTTTTGGCCATATTA
TTACCAAAATGACATTGCCCAAATCCCCAGCCATACAAATGTACAAAGGG
ACAGCCCCCCCCTACTTAGCCATGGGCCCATCCGTCATCATCATCGACCT
CTCTTCAAAAAAAAAAAAAAAACGTTTTAAGGAAGGAAAACACAAAAGCA
GGTCCAGGTCCACCACCAGCAAATTTGAACAAAGGACTAATTAATATTTT
ATAATACACATAAGCAAACCACCAACAGCCATAAAAAAATGCGGGGGCAA
TCCCAAACGTCAATGAAGCGATCACCTTCATTTGAAGGGAATGGCTCTGA
TCACAACTTGGGGGAAAAAAGCTGCAAGTCCAGCTCCAAAAAATGGTCCC
CCCCAAAAAATCCAGGGGTCATCCCAACCCCGGTCCTTGTTGAAAATGAT
TGCACCTCCAAAACTCCTCGCTGGGTTGATGCCAGTTCCGGTAATTGGGA
TGGGACCCAAGGGAACCAAAAACCCAGCGAACCCAATTGGCAGAGGAGCC
AAAATAGGAACATGAAAGTCCCTGGCCCTCCGTTTGGCATCAGGGGCAAA
AAAAACTGTGTAAACAAAAACAAAAGTACCAATAATCTCGGCACCAAAAC
CATCCCCCTTGG
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