CB293898

Overview
NameCB293898
Unique NameCB293898
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.194e-32
Identity = 68/106 (64.15%), Postives = 74/106 (69.81%), Query Frame = -3
Query:  343 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRA 660
            KG G  AEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IPITGTGINPARS G A+I+NKD+ WDD WIFW              Q V+RA
Sbjct:  172 KGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 277          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.560e-32
Identity = 66/106 (62.26%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  343 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRA 660
            +G G GAEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IP+TGTGINPARS G A+I+NKD+ WDD WIFW              Q ++RA
Sbjct:  172 RGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRA 277          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.660e-32
Identity = 66/110 (60.00%), Postives = 75/110 (68.18%), Query Frame = -3
Query:  331 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK 660
            KG   GAEIIGTFV VYTVF A D KR ARD H+P+LAPLPIGFA F+V L  IPITGTGINPARSFG A+I+N ++ WDD WIFW              Q ++RA   K
Sbjct:  160 KGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIK 269          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.474e-32
Identity = 66/110 (60.00%), Postives = 74/110 (67.27%), Query Frame = -3
Query:  331 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK 660
            KG   GAEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IP+TGTGINPARSFG A+IFN D+ WDD WI+W              Q ++R    K
Sbjct:  169 KGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIK 278          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.474e-32
Identity = 68/105 (64.76%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  343 GDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRA 657
            G G  AEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IPITGTGINPARSFG A+IFNK + WDD WIFW              Q V+RA
Sbjct:  166 GTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRA 270          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.474e-32
Identity = 64/106 (60.38%), Postives = 75/106 (70.75%), Query Frame = -3
Query:  343 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRA 660
            +G G GAEI+GTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IP+TGTGINPARS G A+++NKD+ WDD WIFW              Q ++RA
Sbjct:  174 RGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRA 279          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.537e-32
Identity = 67/106 (63.21%), Postives = 73/106 (68.87%), Query Frame = -3
Query:  343 KGDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRA 660
            KG G  AEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IPITGTGINPARS G A+I+N D+ WDD WIFW              Q V+RA
Sbjct:  167 KGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRA 272          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP28_ARATH (Probable aquaporin PIP2-8 OS=Arabidopsis thaliana GN=PIP2-8 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.740e-32
Identity = 66/109 (60.55%), Postives = 74/109 (67.89%), Query Frame = -3
Query:  331 GDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRAIPFK 657
            G   GAEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IPITGTGINPARSFG A+I+N ++ WDD WIFW              Q ++RA   K
Sbjct:  159 GTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDHWIFWVGPFVGALAAAAYHQYILRAAAIK 267          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.740e-32
Identity = 67/105 (63.81%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  343 GDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRA 657
            G G  AEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IPITGTGINPARSFG A+I+NK + WDD WIFW              Q V+RA
Sbjct:  166 GTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRA 270          
BLAST of CB293898 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.011e-31
Identity = 67/105 (63.81%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  343 GDGFGAEIIGTFVFVYTVFFAPDAKRRARDFHVPILAPLPIGFAGFLVPLGPIPITGTGINPARSFGGAIIFNKDRGWDDPWIFWXXXXXXXXXXXXXPQVVIRA 657
            G G  AEIIGTFV VYTVF A D KR ARD HVP+LAPLPIGFA F+V L  IPITGTGINPARSFG A+I+NK + WDD WIFW              Q V+RA
Sbjct:  168 GTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRA 272          
The following BLAST results are available for this feature:
BLAST of CB293898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP23_MAIZE1.194e-3264.15Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]
PIP21_MAIZE1.560e-3262.26Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP27_ARATH2.660e-3260.00Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP27_MAIZE3.474e-3260.00Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP23_ARATH3.474e-3264.76Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP22_MAIZE3.474e-3260.38Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP25_MAIZE4.537e-3263.21Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP28_ARATH7.740e-3260.55Probable aquaporin PIP2-8 OS=Arabidopsis thaliana ... [more]
PIP22_ARATH7.740e-3263.81Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ARATH1.011e-3163.81Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de09_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293898 ID=CB293898; Name=CB293898; organism=Citrus sinensis; type=EST; length=662bp
TTTTTTTTTTTTTTTTTCTTAAAGAAAAAAAACTAGTTTTGGCCATATTA
TTACCAAAATGACATTGCCCAAATCCCCAGCCATACAAATGTACAAAGGG
ACAGCCCCCCCCTACTTAGCCATGGGCCCATCCGTCATCATCATCGACCT
CTCTTCAAAAAAAAAAAAAAAACGTTTTAAGGAAGGAAAACACAAAAGCA
GGTCCAGGTCCACCACCAGCAAATTTGAACAAAGGACTAATTAATATTTT
ATAATACACATAAGCAAACCACCAACAGCCATAAAAAAATGCGGGGGCAA
TCCCAAACGTCAATGAAGCGATCACCTTCATTTGAAGGGAATGGCTCTGA
TCACAACTTGGGGGAAAAAAGCTGCAAGTCCAGCTCCAAAAAATGGTCCC
CCCCAAAAAATCCAGGGGTCATCCCAACCCCGGTCCTTGTTGAAAATGAT
TGCACCTCCAAAACTCCTCGCTGGGTTGATGCCAGTTCCGGTAATTGGGA
TGGGACCCAAGGGAACCAAAAACCCAGCGAACCCAATTGGCAGAGGAGCC
AAAATAGGAACATGAAAGTCCCTGGCCCTCCGTTTGGCATCAGGGGCAAA
AAAAACTGTGTAAACAAAAACAAAAGTACCAATAATCTCGGCACCAAAAC
CATCCCCCTTGG
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