CB293899

Overview
NameCB293899
Unique NameCB293899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 7.774e-59
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GAN VA GYTK DGLGAEI+GTF+LVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI++NK  GW+DHWIFWVGPF+GA LAALYHQVVIRAIPFK
Sbjct:  168 GANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFK 287          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP15_MAIZE (Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.277e-57
Identity = 103/120 (85.83%), Postives = 111/120 (92.50%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GAN V  GYTK DGLGAEI+GTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI+YN+   W+DHWIFWVGPF+GA LAA+YH V+IRA+PFK
Sbjct:  166 GANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRSHAWNDHWIFWVGPFIGAALAAIYHVVIIRALPFK 285          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 103/119 (86.55%), Postives = 111/119 (93.28%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPF 364
            GANVV  GYTK DGLGAEIIGTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN +  W+DHWIFWVGP +GA LAA+YHQ++IRA+PF
Sbjct:  165 GANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQIIIRAMPF 283          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GAN V  GYTK DGLGAEI+GTFVLVYTVFSATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI+YN+   W DHWIFWVGPF+GA LAA+YH VVIRAIPFK
Sbjct:  166 GANAVNPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYHVVVIRAIPFK 285          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP16_MAIZE (Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.792e-55
Identity = 102/120 (85.00%), Postives = 109/120 (90.83%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            GAN V+ GYTK DGLGAE++GTFVLVYTVFSATDAKR+ARDSHVP LAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIY+   GW  HWIFWVGPF GA LAA+YHQVV+RAIPFK
Sbjct:  172 GANAVSPGYTKGDGLGAEVVGTFVLVYTVFSATDAKRTARDSHVPALAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYDNPHGWHGHWIFWVGPFAGAALAAVYHQVVLRAIPFK 291          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP11_MAIZE (Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.057e-55
Identity = 101/118 (85.59%), Postives = 109/118 (92.37%), Query Frame = 2
Query:   14 NVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRAIPFK 367
            NVVA GYTK DGLGAEI+GTF+LVYTVFSATDAKR ARDSHVPILAPLPIGFAVFLVHLAT+ ITGTGINPARSLGAA+IYN+   W DHWIFWVGPF+GA LAA+YHQV+IRAIPFK
Sbjct:  167 NVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRRARDSHVPILAPLPIGFAVFLVHLATMGITGTGINPARSLGAAVIYNQHHAWADHWIFWVGPFIGAALAAIYHQVIIRAIPFK 284          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.855e-52
Identity = 94/116 (81.03%), Postives = 106/116 (91.38%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRA 355
            GAN +A GY++  GLGAEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IYNKD+ WDDHWIFWVGP VGA +AA YHQ ++RA
Sbjct:  162 GANSLASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRA 277          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP25_MAIZE (Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.396e-52
Identity = 94/116 (81.03%), Postives = 105/116 (90.52%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRA 355
            GAN ++ GY+K  GL AEIIGTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYN D+ WDDHWIFWVGPF+GA +AA YHQ V+RA
Sbjct:  157 GANELSAGYSKGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNNDKAWDDHWIFWVGPFIGAAIAAAYHQYVLRA 272          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.205e-52
Identity = 91/116 (78.45%), Postives = 106/116 (91.38%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRA 355
            GAN +A GY++  GLGAEI+GTFVLVYTVFSATD KR+ARDSHVP+LAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA++YNKD+ WDDHWIFWVGP +GA +AA YHQ ++RA
Sbjct:  164 GANSLASGYSRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRA 279          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.051e-51
Identity = 94/116 (81.03%), Postives = 104/116 (89.66%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVIRA 355
            GAN ++ GY+K  GL AEIIGTFVLVYTVFSATD KRSARDSHVP+LAPLPIGFAVF+VHLATIPITGTGINPARSLGAA+IYNKD+ WDD WIFWVGP +GA +AA YHQ V+RA
Sbjct:  161 GANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRA 276          
The following BLAST results are available for this feature:
BLAST of CB293899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
PIP2_PEA7.774e-5990.00Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP15_MAIZE7.277e-5785.83Aquaporin PIP1-5 OS=Zea mays GN=PIP1-5 PE=2 SV=1[more]
PIP1_SOLLC2.117e-5686.55Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP13_ORYSJ2.117e-5686.67Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP16_MAIZE1.792e-5585.00Aquaporin PIP1-6 OS=Zea mays GN=PIP1-6 PE=2 SV=1[more]
PIP11_MAIZE3.057e-5585.59Aquaporin PIP1-1 OS=Zea mays GN=PIP1-1 PE=1 SV=1[more]
PIP21_MAIZE1.855e-5281.03Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP25_MAIZE5.396e-5281.03Aquaporin PIP2-5 OS=Zea mays GN=PIP2-5 PE=1 SV=1[more]
PIP22_MAIZE9.205e-5278.45Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP24_MAIZE2.051e-5181.03Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293899 ID=CB293899; Name=CB293899; organism=Citrus sinensis; type=EST; length=676bp
GCCCTAGGGTGCCAACGTCGTAGCTCATGGCTACACCAAGGCTGATGGTC
TTGGTGCCGAGATTATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCT
GCCACTGATGCCAAACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGC
TCCTCTGCCAATTGGGTTCGCTGTGTTTTTGGTTCACTTGGCTACCATCC
CAATTACCGGAACTGGCATCAACCCAGCGAGGAGTCTTGGAGCTGCAATC
ATCTACAACAAGGACCGCGGTTGGGATGACCACTGGATTTTCTGGGTGGG
ACCATTCGTTGGAGCTGGACTTGCAGCTTTGTACCACCAAGTCGTGATCA
GAGCCATTCCCTTCAAATGAAGCTGATCGCTTCATCGACGTTCGTGATTG
CACCTGCATTTGTTTATGGCTGTTGCTGGTTTGCTTATGTGTATTATAAA
ATATTAATTAGTCCTTTGTTCAAATCTGCTGGTGCTGGACCTGGACCTGC
TTCTGTGTTTTCCTTCCTTAAAACGTTTTTTTTTTTTTTTTGAAGAGAGG
TCGATGATGATGACGGATGGGCCCATGGCTAAGTAGGTGGGCGCTGTCAC
TTTGTACATTTGTATGGCTGTGGATTTGTGCAATGTCATCTTGGTAATAA
TATGGACAAAACTAGTTCTATTACTT
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