CB293899

Overview
NameCB293899
Unique NameCB293899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP1_MOUSE (Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.888e-21
Identity = 54/114 (47.37%), Postives = 67/114 (58.77%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 349
            G N +AHG     GLG EIIGT  LV  V + TD +R          APL IG +V L HL  I  TG GINPARS G+A++    R + +HWIFWVGPF+G  LA L +  ++
Sbjct:  125 GRNDLAHGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP1_SHEEP (Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.772e-21
Identity = 56/114 (49.12%), Postives = 69/114 (60.53%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 349
            G N +A G     GLG EIIGT  LV  V + TD +R  RD  +    PL IGF+V L HL  I  TG GINPARS G+++I      + DHWIFWVGPF+GA LA L +  ++
Sbjct:  127 GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRR-RD--LGDSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVI---THNFQDHWIFWVGPFIGAALAVLIYDFIL 234          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP1_BOVIN (Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.926e-21
Identity = 54/114 (47.37%), Postives = 66/114 (57.89%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 349
            G N +A G     GLG EIIGT  LV  V + TD +R           PL IGF+V L HL  I  TG GINPARS G+++I      + DHWIFWVGPF+GA LA L +  ++
Sbjct:  127 GLNALAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----GPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVI---THNFQDHWIFWVGPFIGAALAVLIYDFIL 233          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP1_PIG (Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.434e-21
Identity = 54/114 (47.37%), Postives = 66/114 (57.89%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 349
            G N +A G     GLG EIIGT  LV  V + TD +R          APL IGF+V L HL  I  TG GINPARS G+A+I      + DHW+FWVGPF+G  LA L +  ++
Sbjct:  127 GLNSLAPGVDSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGFSVALGHLLAIDYTGCGINPARSFGSAVI---THNFQDHWVFWVGPFIGGALAVLIYDFIL 233          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP1_RAT (Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 53/114 (46.49%), Postives = 67/114 (58.77%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 349
            G N +A G     GLG EIIGT  LV  V + TD +R          APL IG +V L HL  I  TG GINPARS G+A++    R + +HWIFWVGPF+G+ LA L +  ++
Sbjct:  125 GRNDLARGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVL---TRNFSNHWIFWVGPFIGSALAVLIYDFIL 231          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP1_PONAB (Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 53/114 (46.49%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 349
            G N +A G     GLG EIIGT  LV  V + TD +R          APL IG +V L HL  I  TG GINPARS G+A+I      + +HWIFWVGPF+G  LA L +  ++
Sbjct:  125 GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVI---THNFSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP1_HUMAN (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 53/114 (46.49%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 349
            G N +A G     GLG EIIGT  LV  V + TD +R          APL IG +V L HL  I  TG GINPARS G+A+I      + +HWIFWVGPF+G  LA L +  ++
Sbjct:  125 GRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----APLAIGLSVALGHLLAIDYTGCGINPARSFGSAVI---THNFSNHWIFWVGPFIGGALAVLIYDFIL 231          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP1_CANFA (Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.585e-19
Identity = 52/114 (45.61%), Postives = 64/114 (56.14%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLAALYHQVVI 349
            G N +A G     GLG EIIGT  LV  V + TD +R           PL IG +V L HL  I  TG GINPARS G+++I      + DHWIFWVGPF+G  LA L +  ++
Sbjct:  127 GRNELAPGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGS----GPLAIGLSVALGHLLAIDYTGCGINPARSFGSSVI---THNFKDHWIFWVGPFIGGALAVLIYDFIL 233          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.483e-17
Identity = 51/121 (42.15%), Postives = 69/121 (57.02%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQVVIRAIPFK 367
            G  +V    T   GL  E+I TF LV+T+F++ D+KR+     +     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP +GA LA  LY  V    + FK
Sbjct:  146 GVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG---NWENHWIYWVGPIIGAVLAGGLYEYVFCPDVEFK 259          
BLAST of CB293899 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 52/121 (42.98%), Postives = 68/121 (56.20%), Query Frame = 2
Query:    8 GANVVAHGYTKADGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDRGWDDHWIFWVGPFVGAGLA-ALYHQVVIRAIPFK 367
            G   V    T   GL  E+I TF LV+T+F++ D+KR+     V     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP +GA LA ALY  V    +  K
Sbjct:  146 GVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA----LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELK 259          
The following BLAST results are available for this feature:
BLAST of CB293899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
AQP1_MOUSE2.888e-2147.37Aquaporin-1 OS=Mus musculus GN=Aqp1 PE=1 SV=3[more]
AQP1_SHEEP3.772e-2149.12Aquaporin-1 OS=Ovis aries GN=AQP1 PE=2 SV=3[more]
AQP1_BOVIN4.926e-2147.37Aquaporin-1 OS=Bos taurus GN=AQP1 PE=1 SV=3[more]
AQP1_PIG6.434e-2147.37Aquaporin-1 OS=Sus scrofa GN=AQP1 PE=2 SV=3[more]
AQP1_RAT1.872e-2046.49Aquaporin-1 OS=Rattus norvegicus GN=Aqp1 PE=2 SV=4[more]
AQP1_PONAB7.114e-2046.49Aquaporin-1 OS=Pongo abelii GN=AQP1 PE=2 SV=3[more]
AQP1_HUMAN7.114e-2046.49Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
AQP1_CANFA1.585e-1945.61Aquaporin-1 OS=Canis familiaris GN=AQP1 PE=2 SV=3[more]
AQP4_HUMAN1.483e-1742.15Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]
AQP4_RAT2.530e-1742.98Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06de09_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06de09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293899 ID=CB293899; Name=CB293899; organism=Citrus sinensis; type=EST; length=676bp
GCCCTAGGGTGCCAACGTCGTAGCTCATGGCTACACCAAGGCTGATGGTC
TTGGTGCCGAGATTATTGGTACTTTTGTTCTTGTCTACACAGTTTTCTCT
GCCACTGATGCCAAACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGC
TCCTCTGCCAATTGGGTTCGCTGTGTTTTTGGTTCACTTGGCTACCATCC
CAATTACCGGAACTGGCATCAACCCAGCGAGGAGTCTTGGAGCTGCAATC
ATCTACAACAAGGACCGCGGTTGGGATGACCACTGGATTTTCTGGGTGGG
ACCATTCGTTGGAGCTGGACTTGCAGCTTTGTACCACCAAGTCGTGATCA
GAGCCATTCCCTTCAAATGAAGCTGATCGCTTCATCGACGTTCGTGATTG
CACCTGCATTTGTTTATGGCTGTTGCTGGTTTGCTTATGTGTATTATAAA
ATATTAATTAGTCCTTTGTTCAAATCTGCTGGTGCTGGACCTGGACCTGC
TTCTGTGTTTTCCTTCCTTAAAACGTTTTTTTTTTTTTTTTGAAGAGAGG
TCGATGATGATGACGGATGGGCCCATGGCTAAGTAGGTGGGCGCTGTCAC
TTTGTACATTTGTATGGCTGTGGATTTGTGCAATGTCATCTTGGTAATAA
TATGGACAAAACTAGTTCTATTACTT
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