CB293923

Overview
NameCB293923
Unique NameCB293923
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA_STAA8 (Catalase OS=Staphylococcus aureus (strain NCTC 8325) GN=katA PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 67/198 (33.84%), Postives = 102/198 (51.52%), Query Frame = -1
Query:  221 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHGERYPIPSDVIPGRREKACIVKENNFKQPGERFRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVFYWSQADRSLGQKVASGLNV 778
            VG   LN+N DN+F + E  AF P  ++PG+ +S DKMLQ  +F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G         +N F+QPG+ FR  + D +ER       A+    VT +V+   + +  +AD   G+ VA  L +
Sbjct:  294 VGEFELNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA_STAA3 (Catalase OS=Staphylococcus aureus (strain USA300) GN=katA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 67/198 (33.84%), Postives = 102/198 (51.52%), Query Frame = -1
Query:  221 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHGERYPIPSDVIPGRREKACIVKENNFKQPGERFRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVFYWSQADRSLGQKVASGLNV 778
            VG   LN+N DN+F + E  AF P  ++PG+ +S DKMLQ  +F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+   ++D     ++ P P+D   G         +N F+QPG+ FR  + D +ER       A+    VT +V+   + +  +AD   G+ VA  L +
Sbjct:  294 VGEFELNRNPDNYFMDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHYYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA_STAAU (Catalase OS=Staphylococcus aureus GN=katA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.128e-20
Identity = 66/198 (33.33%), Postives = 102/198 (51.52%), Query Frame = -1
Query:  221 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPS---RYDPTRHGERYPIPSDVIPGRREKACIVKENNFKQPGERFRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVFYWSQADRSLGQKVASGLNV 778
            VG   LN+N DN+F + E  AF P  ++PG+ +S DKMLQ  +F+YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     ++P+   ++D     ++ P P+D   G         +N F+QPG+ FR  + D +ER       A+    VT +V+   + +  +AD   G+ VA  L +
Sbjct:  294 VGEFELNRNPDNYFTDVEQAAFAPTNIIPGLDFSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPKGVGIENICPFSR---DGQMRVVDNNQGGGTHHYPNNHGKFDSQPEYKKPPFPTDGY-GYEYNQRQDDDNYFEQPGKLFRLQSEDAKERIFTNTANAM--EGVTDDVKRRHIRHCYKADPEYGKGVAKALGI 485          
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA_VIBCH (Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 59/186 (31.72%), Postives = 94/186 (50.54%), Query Frame = -1
Query:  224 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTRHGERYPIPSDVIPGRREKACIVKENNFKQPGERFRSW-APDRQERFLNRWIKALCDPRVTHEVRSIWVFYWSQADRSLGQKVASGLN 778
            VG + LNK  DNFF E E  AF P  ++PGI  S D++LQ  +FAY DTQ +RLG N   LP+N P     +++ +G  N      +++Y PSR    +   ++      + G  ++  I    NF Q G  +RS    D+Q+   N  +    +     E+++  V ++ +AD+  G ++A   N
Sbjct:  308 VGTMTLNKVPDNFFLETEQSAFAPSNLIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPINRPLVEVNSHNQEGASNSAQTASDINYQPSRKLELKEDPQFKAVQTQLVGSVQQKAISNPRNFYQAGVLYRSLNEQDKQDLITN--LXGBLNKVTDKEIKATMVSHFYRADKDYGTRLARATN 491          
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA_STAWA (Catalase OS=Staphylococcus warneri GN=katA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 68/198 (34.34%), Postives = 100/198 (50.51%), Query Frame = -1
Query:  221 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSR---YDPTRHGERYPIPSDVIPGRREKACIVKENNFKQPGERFRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVFYWSQADRSLGQKVASGLNV 778
            VG   LN+N +N+F + E  AF P  +VPG+ YS DKMLQ  +F YGD QR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+    YD     ++ P P+D   G         +N F+QPG+ FR  + + +ER       A+    VT +V+   + +  +AD   G+ VA  L +
Sbjct:  294 VGEFELNRNPNNYFQDVEQAAFAPTNIVPGLDYSPDKMLQGRLFPYGDAQRYRLGVNHWQIPVNQPKGVGIENLCPFSR---DGQMRILDDNQGGGPHYYPNNQGVYDSQPEFKKPPFPADG-DGYEYNQRQDDDNYFEQPGKLFRLQSDEAKERIFTNTANAM--DGVTEDVKRRHIRHCYKADPDYGKGVAKALGI 485          
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA_BACSU (Vegetative catalase OS=Bacillus subtilis GN=katA PE=1 SV=5)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 62/191 (32.46%), Postives = 97/191 (50.79%), Query Frame = -1
Query:  221 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTRHGERYPIPSD-----VIPGRREKACIVKENNFKQPGERFRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVFYWSQADRSLGQKVASGLNV 778
            VGR+VL++N +N+FAE E   F+PG +VPGI  S DKMLQ  +FAY D  R+R+G N+  LP+N  +    N   DG M F        Y    Y+P   G     P D      + G  +       +++ Q G+ +R  + D + R +   + A+  P    E++   + ++ +AD   G++VA GL +
Sbjct:  292 VGRMVLDRNPENYFAEVEQATFSPGTLVPGIDVSPDKMLQGRLFAYHDAHRYRVGANHQALPINRARNKVNNYQRDGQMRFDDNGGGSVY----YEPNSFGGPKESPEDKQAAYPVQGIADSVSYDHYDHYTQAGDLYRLMSEDERTRLVENIVNAM-KPVEKEEIKLRQIEHFYKADPEYGKRVAEGLGL 477          
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA2_CAEEL (Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 5.391e-20
Identity = 54/133 (40.60%), Postives = 80/133 (60.15%), Query Frame = -1
Query:  392 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHY----DGFMNFMHRDEEVDYFPSRYDPTRHGERYPIPSDVIPGRREKACIVKENNFKQP 778
            VG++VLN+N+ N+FAE E  AF P  +VPGI +S DKMLQ  IF+Y DT  HRLGPNY+ LPVN   CP+R+  +    DG M +  + +  +YFP+ +   R  +     +    G  ++     ++N++QP
Sbjct:  309 VGKMVLNRNVKNYFAEVEQAAFCPAHIVPGIEFSPDKMLQGRIFSYTDTHYHRLGPNYIQLPVN---CPYRSRAHTTQRDGAMAYESQGDAPNYFPNSFRGYRTRDDVKESTFQTTGDVDRYETGDDHNYEQP 438          
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA_VIBVY (Catalase OS=Vibrio vulnificus (strain YJ016) GN=VVA0294 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.195e-20
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = -1
Query:  221 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTR-----HGERYPIPSDVIPGRREKACIVKENNFKQPGERFRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVFYWSQADRSLGQKVASGLNV 778
            VG + LN+  DNFF E E  AF P  ++PGI  S D++LQ  +FAY DTQ +RLG N   LPVN+PK P  N++ DG  N       VD     Y+P+R       ++       + G  ++  I    +F Q G  +RS +   +   ++  +    +     EV++I V Y+ +AD+  G ++A   +V
Sbjct:  308 VGTMTLNRVPDNFFLETEQSAFAPSNIIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNSPKSPVANHNQDGPSNNSTGLGNVDSLDVNYEPSRLVNLTVDKQARAVETPLSGHVQQQAIRNPRDFFQAGVLYRSLSEQDKADLIHN-LSGDLNKVNDAEVKAIMVSYFYRADKEYGTRLAKATDV 497          
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA_VIBVU (Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 9.195e-20
Identity = 63/191 (32.98%), Postives = 97/191 (50.79%), Query Frame = -1
Query:  221 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPKCPHRNNHYDGFMNFMHRDEEVDYFPSRYDPTR-----HGERYPIPSDVIPGRREKACIVKENNFKQPGERFRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVFYWSQADRSLGQKVASGLNV 778
            VG + LN+  DNFF E E  AF P  ++PGI  S D++LQ  +FAY DTQ +RLG N   LPVN+PK P  N++ DG  N       VD     Y+P+R       ++       + G  ++  I    +F Q G  +RS +   +   ++  +    +     EV++I V Y+ +AD+  G ++A   +V
Sbjct:  308 VGTMTLNRVPDNFFLETEQSAFAPSNIIPGIEPSEDRLLQGRLFAYADTQLYRLGANLFQLPVNSPKSPVANHNQDGPSNNSTGLGNVDSLDVNYEPSRLVNLTVDKQARAVETPLSGHVQQQAIRNPRDFFQAGVLYRSLSEQDKADLIHN-LSGDLNKVNDAEVKAIMVSYFYRADKEYGTRLAKATDV 497          
BLAST of CB293923 vs. ExPASy Swiss-Prot
Match: CATA_STAXY (Catalase A OS=Staphylococcus xylosus GN=katA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.195e-20
Identity = 64/197 (32.49%), Postives = 101/197 (51.27%), Query Frame = -1
Query:  221 VGRLVLNKNIDNFFAENEMLAFNPGIVVPGIYYSNDKMLQC*IFAYGDTQRHRLGPNYLMLPVNAPK-------CPHRNNHYDGFMNFMHRDE--EVDYFPSRYDPTRHGERYPIPSDVIPGRREKACIVK--ENNFKQPGERFRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVFYWSQADRSLGQKVASGLNV 778
            VG   LN+N +N+F + E  AF P  +VPG+ +S DKMLQ  +F+YGDTQR+RLG N+  +PVN PK       CP      DG M  +  ++     Y+P+         +Y  P+  I G+  +    +  +N F+QPG+ FR  + + Q+   N     +    VT  ++   + +  +AD + GQ VA  + +
Sbjct:  291 VGEFELNRNPENYFQDVEQAAFAPTNIVPGLDFSPDKMLQGRLFSYGDTQRYRLGVNHWQIPVNQPKGVGMENICPFSR---DGHMRILDNNQGASTHYYPNSNGAFEDQPQYKKPALDIQGQAYEYDFREDDDNYFEQPGKLFRLLSSEEQQILFNNTANEMSP--VTDALKHRHIRHCYKADPAYGQGVAEAMGI 482          
The following BLAST results are available for this feature:
BLAST of CB293923 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
CATA_STAA81.419e-2033.84Catalase OS=Staphylococcus aureus (strain NCTC 832... [more]
CATA_STAA31.419e-2033.84Catalase OS=Staphylococcus aureus (strain USA300) ... [more]
CATA_STAAU4.128e-2033.33Catalase OS=Staphylococcus aureus GN=katA PE=3 SV=... [more]
CATA_VIBCH5.391e-2031.72Catalase OS=Vibrio cholerae GN=VC_1585 PE=3 SV=2[more]
CATA_STAWA5.391e-2034.34Catalase OS=Staphylococcus warneri GN=katA PE=3 SV... [more]
CATA_BACSU5.391e-2032.46Vegetative catalase OS=Bacillus subtilis GN=katA P... [more]
CATA2_CAEEL5.391e-2040.60Catalase-2 OS=Caenorhabditis elegans GN=ctl-1 PE=2... [more]
CATA_VIBVY9.195e-2032.98Catalase OS=Vibrio vulnificus (strain YJ016) GN=VV... [more]
CATA_VIBVU9.195e-2032.98Catalase OS=Vibrio vulnificus GN=VV2_1473 PE=3 SV=... [more]
CATA_STAXY9.195e-2032.49Catalase A OS=Staphylococcus xylosus GN=katA PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06df10_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06df10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293923 ID=CB293923; Name=CB293923; organism=Citrus sinensis; type=EST; length=784bp
TTATTTTTTTTTTTAAAAAACAGACTTTTATTAATTGAAACAACCTTAAA
AAAGTCCCATAACATGCAAGTTTATTTTCTATATCTACAATATACAACAG
CAAACATAGGATCGAAATTCTTCACATAGCTGCACCCTTGGTGTTCACTC
CTTGCTCACTCTTGGCAAGTCAAAAGCATCCAGTGTTCCAGTTCAAGTGA
CACCTTCAAATGCTTGGCCTCACATTGAGACCAGAAGCTACCTTCTGACC
CAGAGATCTGTCGGCCTGAGACCAATAAAAGACCCATATGCTGCGAACCT
CATGGGTGACACGAGGGTCACATAAAGCCTTAATCCATCGATTAAGGAAC
CTCTCTTGCCTGTCTGGGGCCCAGGATCGGAATCTCTCTCCAGGCTGCTT
GAAGTTGTTTTCCTTCACAATGCAAGCCTTCTCACGCCTTCCTGGAATTA
CATCAGAAGGAATGGGATATCTCTCACCATGACGAGTAGGATCATACCTC
GAAGGAAAGTAATCGACCTCCTCATCCCTGTGCATGAAATTCATGAAACC
ATCATAATGATTGTTGCGATGAGGACATTTGGGTGCATTAACTGGAAGCA
TCAAGTAGTTGGGGCCAAGGCGATGCCTCTGGGTATCACCATAGGCAAAG
ATTCAACATTGGAGCATCTTATCATTTGAGTAGTAGATCCCAGGAACCAC
GATACCAGGGTTAAATGCAAGCATTTCATTTTCCGCAAAGAAATTATCGA
TGTTCTTGTTCAAAACCAAGCGTCCAACTGGCTG
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