CB293960

Overview
NameCB293960
Unique NameCB293960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7121 contig Csv1_Contig7121:49..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PPR44_ARATH (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana GN=At1g15480 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 49/185 (26.49%), Postives = 92/185 (49.73%), Query Frame = 3
Query:  171 LGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALLNCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERV 722
            +  +G SV  AL+ ++ +GK   +   E  +  LRK   +  AL++ EW+ E+++      D+A  LDL +K +G    E Y   + E  +    Y  LL  +        A A+F KM +L F  +T   N +  +Y R+ + +K+  ++  +++ N+  +  TY + + +    NDI G+E++
Sbjct:  135 VSVSGLSVGSALDKWVEQGKDTNRKEFESAMLQLRKRRMFGRALQMTEWLDENKQFEMEERDYACRLDLISKVRGWYKGEAYIKTIPESFRGELVYRTLLANHVATSNVRTAEAVFNKMKDLGFPLSTFTCNQMLILYKRVDK-KKIADVLLLLEKENLKPNLNTYKILIDTKGSSNDITGMEQI 318          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP234_ARATH (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana GN=At3g15590 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 3
Query:  123 PFPTGNEDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWM-ESRKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALL-NCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERV 722
            P     + +LY+ + A      SV   L  ++ EGK + +  +   + +LRK   Y   L++ EW+  + +  F+  ++A  LDL AK   +  AE +   + E ++    Y  LL NC  K     +A  +F KM ELKF  +  A N L  +Y  +   +K+  ++  M++ NI     TY   + S     DI G+E++
Sbjct:  138 PTKKRGQSELYESIVAYK----SVKHVLEKWVKEGKDLSQAEVTLAIHNLRKRKSYAMCLQLWEWLGANTQFEFTEANYASQLDLVAKVHSLQKAEIFLKDIPESSRGEVVYRTLLANCVLKH-HVNKAEDIFNKMKELKFPTSVFACNQLLLLY-SMHDRKKISDVLLLMERENIKPSRATYHFLINSKGLAGDITGMEKI 333          
BLAST of CB293960 vs. ExPASy Swiss-Prot
Match: PP135_ARATH (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana GN=At1g80270 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 53/196 (27.04%), Postives = 100/196 (51.02%), Query Frame = 3
Query:  141 EDKLYKRLSALGATGGSVTGALNAYIMEGKTVRKDMLEYCVRSLRKFGRYRHALEVIEWMES-RKIHFSYTDFAVYLDLTAKTKGIAAAEEYFNGLSEYAKNRYTYGALL-NCYCKELMTERALALFEKMDELKFLGNTVAFNNLSTMYLRLGQPEKVRPLVNQMKQRNISLDNLTYIVWMQSYSHLNDIDGVERV 722
            + +L+K +  + A G S+  AL+ ++ EG  + +  +   +  LR+   Y  AL++ EW+E+ +KI  +  D+A  LDLT K +G+   E     + +  K    Y  LL NC     + +  L +F KM +L F  +    + +  ++ R+ + +K+  ++  M++ NI    LTY + +      NDI G+E++
Sbjct:  129 QSELFKTI--VSAPGLSIGSALDKWVEEGNEITRVEIAKAMLQLRRRRMYGRALQMSEWLEANKKIEMTERDYASRLDLTVKIRGLEKGEACMQKIPKSFKGEVLYRTLLANCVAAGNVKKSEL-VFNKMKDLGFPLSGFTCDQMLLLHKRIDR-KKIADVLLLMEKENIKPSLLTYKILIDVKGATNDISGMEQI 320          
The following BLAST results are available for this feature:
BLAST of CB293960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PPR44_ARATH8.873e-1426.49Pentatricopeptide repeat-containing protein At1g15... [more]
PP234_ARATH2.582e-1327.72Pentatricopeptide repeat-containing protein At3g15... [more]
PP135_ARATH9.810e-1327.04Pentatricopeptide repeat-containing protein At1g80... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dh08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dh08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293960 ID=CB293960; Name=CB293960; organism=Citrus sinensis; type=EST; length=737bp
GCCCTAAGCGGAAGATGATGATTCGCAATCAAAGCCGTCTGCTATCAACC
GGATCGTATCTCGTGAGGCAATTATGTAGCACGCCAACGGAAACAGTTTC
GCAAAGGATAGCCGCGCCGACGCCGTTTCCGACCGGAAATGAAGATAAAC
TGTACAAGAGGCTGTCGGCTCTCGGAGCCACCGGAGGCAGCGTGACCGGG
GCGCTAAATGCGTACATAATGGAGGGTAAAACCGTCAGAAAAGATATGCT
CGAATATTGCGTCCGGAGCCTCCGCAAATTTGGCCGCTACCGTCATGCAC
TTGAGGTCATTGAATGGATGGAGAGTCGGAAAATACATTTCTCTTACACT
GACTTTGCAGTATATCTAGATCTTACGGCAAAAACCAAAGGGATAGCTGC
TGCTGAAGAGTACTTCAATGGCCTCTCAGAATATGCAAAGAATAGATACA
CTTATGGAGCACTTCTGAATTGCTATTGCAAGGAACTTATGACGGAAAGG
GCATTGGCTCTGTTTGAGAAGATGGATGAACTGAAGTTTCTGGGAAATAC
TGTAGCTTTTAATAATCTCAGCACTATGTATTTGAGATTGGGCCAGCCAG
AGAAGGTGCGTCCTCTGGTGAACCAAATGAAGCAAAGGAACATTTCTCTA
GACAACCTTACTTATATTGTCTGGATGCAGAGCTACTCTCATTTAAATGA
CATTGATGGGGTAGAGAGAGTTTCTTATGAAATGTGC
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