CB293971

Overview
NameCB293971
Unique NameCB293971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293971_ssr3 microsatellite CB293971_ssr3:3..14. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293971_ssr22 microsatellite CB293971_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3631 contig Csv1_Contig3631:8..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.072e-32
Identity = 72/189 (38.10%), Postives = 117/189 (61.90%), Query Frame = 3
Query:  111 LIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNI-EKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            +IYS VARG+ +LAE+T   GNF  I  + L  +P ++ K +Y  + + F+YLV D  TY  +A E  GR++P  FL+ VK  F   Y G K  TA+A G+N +F   L+  M +   +   +  +++  A++ EVK +++ +I  ++L RGEKIE+LV+RT+ L  Q+  F++Q  Q++  MW++N+K
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVK 189          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.235e-30
Identity = 67/190 (35.26%), Postives = 119/190 (62.63%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKF-TYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            S++Y+ VARGTV+LAE +  + N + IA Q L+K+P + +   +Y+ D + F+    DG T   +A E  GR++P +FLE + + F++ YG     +A A  +N EF   L + ++Y  + P     ++++K ++++V+ VM++NI+ +LDRGE++ELLVD+T N++     FR+Q  +    +W++N K
Sbjct:    2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCK 189          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.506e-29
Identity = 67/189 (35.45%), Postives = 110/189 (58.20%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            +++++ VARGT ILA++    GNF  +  Q L K+PS NNK TY+   + F+Y+  D   Y  +  +   R    +FL  VK+ F   Y G +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 188          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.506e-29
Identity = 70/191 (36.65%), Postives = 108/191 (56.54%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEE--ISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            +++++ VARGT ILA++    GNF  +  Q L K+PS NNK TY+   + F+Y+  D   Y  +  +   R     FL  +K+ F   Y G +A TA+   +N EF   L   ++Y   H E     ++A+ +AQV E+KG+M+ NI+ V  RGEK+ELL+D+TENL   +  F+     + R M  +N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKY---HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.227e-28
Identity = 66/189 (34.92%), Postives = 109/189 (57.67%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            +++++ VARGT ILA++    GNF  +  Q L K+PS NNK TY+   + F+Y+  D   Y  +  +   R     FL  VK+ F   Y G +A TA+   +N EF   L   +++  ++ + + ++ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNVK 188          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 66/189 (34.92%), Postives = 109/189 (57.67%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            +++++ VARGT ILA++    GNF  +  Q L K+PS NNK TY+   + F+Y+  D   Y  +  +   R     FL  +K+ F   Y G +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 66/189 (34.92%), Postives = 109/189 (57.67%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            +++++ VARGT ILA++    GNF  +  Q L K+PS NNK TY+   + F+Y+  D   Y  +  +   R     FL  +K+ F   Y G +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.661e-28
Identity = 66/189 (34.92%), Postives = 108/189 (57.14%), Query Frame = 3
Query:  108 SLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            +++++ VARGT ILA++    GNF  +  Q L K+PS NNK TY    + F+Y+  D   Y  +  +   R     FL  +K+ F   Y G +A TA+   +N EF   L   +++  ++ + + K+ + +AQV E+KG+M+ NI+ V  RGE++ELL+D+TENL   +  F+     + R M  +N+K
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLK 188          
BLAST of CB293971 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.340e-26
Identity = 65/193 (33.68%), Postives = 110/193 (56.99%), Query Frame = 3
Query:   96 MGQQSLIYSFVARGTVILAEYTEFTGNFTGIAAQCLQKLPSSNNKFTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFLERVKEDFIKRYGGGKAATAVANGLNKEFGPKLKEHMQYCIDHPEEISKLAKVKAQVSEVKGVMMDNIEKVLDRGEKIELLVDRTENLRSQAQDFRQQGTQMRRKMWFQNMK 674
            M Q  ++Y+ V+   V L E+    GNF  +A + + K+P ++ K  Y  + H F+Y+ ++   +  +  E +G Q+P  FL  +++ FI+ YG   +  +        F   L+E M+Y   +P+  +K+  V  QVSE KG + D IEK + RGEKIE++VD+TE L+S++  F+     ++RK+W+QN K
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFSQNS-PTATYDPFIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKK 189          
The following BLAST results are available for this feature:
BLAST of CB293971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
VAM7B_DICDI1.072e-3238.10Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VA712_ARATH2.235e-3035.26Vesicle-associated membrane protein 712 OS=Arabido... [more]
VAMP7_MOUSE5.506e-2935.45Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_CHICK5.506e-2936.65Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT1.227e-2834.92Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_HUMAN2.092e-2834.92Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN2.092e-2834.92Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_PONAB4.661e-2834.92Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI3.340e-2633.68Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_01da11_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01da11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293971 ID=CB293971; Name=CB293971; organism=Citrus sinensis; type=EST; length=722bp
GCCTCTCTCTCTCTTCGTTCTTCTCTCTCTCTCAGGATTAGGGTTTGTTC
TTGTTGTTGTGGTCGTATTAGTAGTAGTTGTTTTTTATCAGAAAAATGGG
ACAGCAATCGTTGATCTACAGCTTCGTGGCTCGAGGAACGGTGATACTAG
CTGAGTACACGGAGTTCACCGGAAACTTCACCGGCATAGCTGCTCAGTGT
CTCCAGAAACTTCCTTCTAGTAACAACAAGTTCACTTACAATTGCGACGG
CCACACTTTTAACTACCTTGTTGATGACGGCTTCACTTACTGTGTGGTTG
CAGTTGAATCTGTTGGTCGACAGGTTCCAATTGCCTTCCTTGAGCGTGTG
AAAGAGGATTTTATAAAGAGATATGGTGGAGGAAAAGCTGCAACAGCAGT
CGCTAACGGCTTGAACAAGGAGTTTGGGCCCAAATTGAAGGAGCATATGC
AGTACTGCATCGATCATCCAGAGGAGATCAGCAAGCTTGCTAAAGTGAAG
GCGCAGGTGTCAGAAGTCAAAGGTGTTATGATGGATAACATAGAGAAGGT
TCTTGATCGTGGAGAGAAAATTGAGCTTCTGGTGGATAGAACAGAGAATC
TTCGTTCACAGGCGCAGGATTTCAGACAGCAGGGAACCCAGATGAGGAGA
AAGATGTGGTTTCAGAACATGAAGATAAAACTGATTGTTCTGGGAATCAT
AATTGCCTTGATTCTCATCATA
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