CB293973

Overview
NameCB293973
Unique NameCB293973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293973_ssr10 microsatellite CB293973_ssr10:10..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4376 contig Csv1_Contig4376:160..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_YEAST (Translationally-controlled tumor protein homolog OS=Saccharomyces cerevisiae GN=TMA19 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 54/157 (34.39%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSE---ERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDP 548
            M++Y+D+ + DELLSD++  K +++ +++E +   V  G  ++DIGANPS                V ++  +FRLQ Q AFDKK F+TY+K ++K +  +L E   E    F++  +   K ++    D +FF GESM  D  +V   Y+E  T P
Sbjct:    1 MIIYKDIFSNDELLSDAYDAKLVDD-VIYEADCAMVNVGGDNIDIGANPSAEGGDDDVEEGAEM--VNNVVHSFRLQ-QTAFDKKSFLTYIKGYMKAVKAKLQETNPEEVPKFEKGAQTYVKKVIGSFKDWEFFTGESMDPDAMVVMLNYREDGTTP 153          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_DEBHA (Translationally-controlled tumor protein homolog OS=Debaryomyces hansenii GN=DEHA2E17468g PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 55/157 (35.03%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGATKF---LLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDP 548
            M+++ D+++GDELLSD++  K +++ +++E +   V     DVDIGANPS                V ++  +FRLQ Q +FDKK F+TYMK ++K +   L+E+  +  +    GA  +   ++S   D  F+ GESM  DG +V   Y+E  T P
Sbjct:    1 MIIFTDVISGDELLSDAYDVKLVDD-VVYEADCAMVNVNNGDVDIGANPSAEEGGEDLEDGTET--VNNVVYSFRLQ-QTSFDKKSFMTYMKGYMKRVKAHLAEKNPEAIEAFENGAKTYFKKVVSSFGDWDFYTGESMDPDGMVVLLNYREDGTTP 153          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_BOMMO (Translationally-controlled tumor protein homolog OS=Bombyx mori GN=Tctp PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 59/174 (33.91%), Postives = 91/174 (52.30%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAF-DKKPFVTYMKRFIKLLTPELSEERQD---IFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYK--EGATDPTFLYMADALKEVK 587
            M +Y+D++TGDE+ SD++  K ++  +++EV G+ V +   D+ I G NPS                 VDI    RL E  AF DKK +  Y+K ++K L  +L E+  D   +FK N+    K +L +  +LQFF GESM  DG +    Y+  +G   P  ++    L+E K
Sbjct:    1 MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEADEGTDSAVESG--VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 171          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_PIG (Translationally-controlled tumor protein OS=Sus scrofa GN=TPT1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGAT---KFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            M++Y+DL++ DE+ SD +  +EI +G+  EVEGK V +   ++D   IG N S                V DI     LQE  +F K+ +  Y+K ++K +  +L E+R +  K  + GA    K +L+   + QFF+GE+M  DG +    Y+E    P  ++  D L+  KC
Sbjct:    1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_PANTR (Translationally-controlled tumor protein OS=Pan troglodytes GN=TPT1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGAT---KFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            M++Y+DL++ DE+ SD +  +EI +G+  EVEGK V +   ++D   IG N S                V DI     LQE  +F K+ +  Y+K ++K +  +L E+R +  K  + GA    K +L+   + QFF+GE+M  DG +    Y+E    P  ++  D L+  KC
Sbjct:    1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_HUMAN (Translationally-controlled tumor protein OS=Homo sapiens GN=TPT1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 56/174 (32.18%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGAT---KFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            M++Y+DL++ DE+ SD +  +EI +G+  EVEGK V +   ++D   IG N S                V DI     LQE  +F K+ +  Y+K ++K +  +L E+R +  K  + GA    K +L+   + QFF+GE+M  DG +    Y+E    P  ++  D L+  KC
Sbjct:    1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_LONON (Translationally-controlled tumor protein homolog OS=Lonomia obliqua GN=Tctp PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 61/175 (34.86%), Postives = 93/175 (53.14%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWV--VQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAF-DKKPFVTYMKRFIKLLTPELSE---ERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYK--EGATDPTFLYMADALKEVK 587
            M +Y+D++TGDE+ SD++  K ++  +++EV GK V   QG + +D G NPS                 VDI    RL E  AF DKK +  Y+K ++K L  +L E   ++ DIFK N+    K +L++  +LQFF GESM  DG +    Y+  +    P  ++    L+E K
Sbjct:    1 MRIYKDIITGDEMFSDTYKVKLVDE-VIYEVTGKLVSRTQGDIQID-GFNPSAEEADEGTDSNVETG--VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVDIFKTNMNKVMKDILARFKELQFFTGESMDCDGMVAMMEYRKVDETEIPIMMFFKHGLEEEK 171          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_DROPS (Translationally-controlled tumor protein homolog OS=Drosophila pseudoobscura pseudoobscura GN=Tctp PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 56/175 (32.00%), Postives = 97/175 (55.43%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAF-DKKPFVTYMKRFIKLLTPELSE---ERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKE--GATDPTFLYMADALKEVKC 590
            M +++D++TGDE+ +D++  K +++ +++EV GK + +   ++ + GAN S                 VD+    RL E  AF DKK +  Y+K ++K +  +L+E   ++ D+FK N+  A K +L +  +LQFF GESM  DG +    Y+E  G + P  ++    L+E KC
Sbjct:    1 MKIFKDIITGDEMFADTYKIKLVDD-VVYEVYGKLISREGSEIKLEGANASAEEADEGTDTNVESG--VDVVLNHRLVECFAFGDKKSYTLYLKDYMKKVLAKLAEKSPDQVDVFKTNMNKAMKDILGRFKELQFFTGESMDCDGMVALVEYREIDGQSIPVLMFFKHGLEEEKC 172          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_BOVIN (Translationally-controlled tumor protein OS=Bos taurus GN=TPT1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.866e-17
Identity = 55/174 (31.61%), Postives = 90/174 (51.72%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGAT---KFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            M++Y+DL++ DE+ SD +  +E+ +G+  EVEGK V +   ++D   IG N S                V DI     LQE  +F K+ +  Y+K ++K +  +L E+R +  K  + GA    K +L+   + QFF+GE+M  DG +    Y+E    P  ++  D L+  KC
Sbjct:    1 MIIYRDLISHDEMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGMVALLDYREDGVTPYMIFFKDGLEMEKC 172          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_RABIT (Translationally-controlled tumor protein OS=Oryctolagus cuniculus GN=TPT1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.530e-16
Identity = 55/174 (31.61%), Postives = 89/174 (51.15%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGAT---KFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            M++Y+DL++ DE+ SD +  +EI  G+  EVEGK V +   ++D   IG N S                V DI     LQE  +F K+ +  Y+K ++K +  +L E+R +  K  + GA    K +L+   + QF++GE+M  DG +    Y+E    P  ++  D L+  KC
Sbjct:    1 MIIYRDLISHDEMFSDIYKIREIAGGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGV-DIVMNHHLQET-SFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFYIGENMNPDGMVALLDYREDGVTPFMIFFKDGLEMEKC 172          
The following BLAST results are available for this feature:
BLAST of CB293973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TCTP_YEAST3.082e-1734.39Translationally-controlled tumor protein homolog O... [more]
TCTP_DEBHA3.082e-1735.03Translationally-controlled tumor protein homolog O... [more]
TCTP_BOMMO3.082e-1733.91Translationally-controlled tumor protein homolog O... [more]
TCTP_PIG5.257e-1732.18Translationally-controlled tumor protein OS=Sus sc... [more]
TCTP_PANTR5.257e-1732.18Translationally-controlled tumor protein OS=Pan tr... [more]
TCTP_HUMAN5.257e-1732.18Translationally-controlled tumor protein OS=Homo s... [more]
TCTP_LONON6.866e-1734.86Translationally-controlled tumor protein homolog O... [more]
TCTP_DROPS6.866e-1732.00Translationally-controlled tumor protein homolog O... [more]
TCTP_BOVIN6.866e-1731.61Translationally-controlled tumor protein OS=Bos ta... [more]
TCTP_RABIT1.530e-1631.61Translationally-controlled tumor protein OS=Orycto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293973 ID=CB293973; Name=CB293973; organism=Citrus sinensis; type=EST; length=755bp
TCCGCTGCGTCTCTCTCTCTCTCTCTCTCTCCAGTTTTCTCCGTTGATTA
TTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAATCATGTTGGTCTATCA
AGATCTCCTCACCGGTGATGAGCTTCTCTCCGATTCTTTTCCCTACAAGG
AAATTGAGAATGGGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTACAA
GGAGCCGTTGATGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGA
TGAGGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTTGACATTGACG
ACACATTCAGGCTACAGGAGCAACCCGCTTTTGACAAGAAGCCGTTTGTA
ACATACATGAAGAGATTCATCAAGTTGCTGACGCCCGAGCTGAGTGAGGA
GAGGCAGGATATATTTAAGAGGAATATTGAGGGAGCGACCAAGTTCTTGC
TCTCCAAGCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGCATGCGTGAT
GATGGCTGTCTTGTCTTTGCTTACTACAAGGAAGGTGCGACCGACCCAAC
ATTTTTGTATATGGCTGATGCATTGAAGGAGGTGAAGTGCTAAGCTGGGC
TTCGAAGAGGAAGTGCCTGCTGTAGTTCTAGTTTTAATTATTGCCCGCGG
TTATTTTTATGTATCGTTTGTGCTGGTTAACTCGGGACTTGCGCTTGCTG
CTTTTTAGTTTTTATTTTGACATATCCACTATGTTTTTCTGCTCTTAATT
ATTGG
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