CB293973

Overview
NameCB293973
Unique NameCB293973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293973_ssr10 microsatellite CB293973_ssr10:10..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4376 contig Csv1_Contig4376:160..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_XENTR (Translationally-controlled tumor protein homolog OS=Xenopus tropicalis GN=tpt1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 52/173 (30.06%), Postives = 83/173 (47.98%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWV--VQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSE---ERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            M++Y+D +T DE+ SD +   E  +G+ +EVEGK +  V+GA+D  +    +                 VDI    +LQE   F K  +  Y+K ++KL+  +L E   +R   F + I+   K +L    + QF+ GE M  DG +    Y+E    P  ++  D L   KC
Sbjct:    1 MIIYKDTVTEDEMFSDIYKIAETPDGMCFEVEGKIIQRVEGAIDDALIGGNASAECQEEDIGGATTVSGVDIVINHKLQET-GFTKDSYKNYIKDYVKLVKAKLEETDPDRVKPFMKGIQDRVKLILGNFKNYQFYTGERMNPDGMVALLDYREDGVTPFMIFFKDGLISEKC 172          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_CHICK (Translationally-controlled tumor protein homolog OS=Gallus gallus GN=TPT1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.450e-16
Identity = 54/174 (31.03%), Postives = 86/174 (49.43%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQDIFKRNIEGAT---KFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVKC 590
            M++Y+D ++ DE+ SD +  +E+ NG+  EVEGK V +    +D   IG N S                V DI     LQE  +F K+ +  Y+K ++K +   L E + +  K  + GA    K +L+   + QFFVGE+M  DG +    ++E    P  ++  D L+  KC
Sbjct:    1 MIIYRDCISQDEMFSDIYKIREVANGLCLEVEGKMVTRTEGQIDDSLIGGNASAEGPEGEGTEATVITGV-DIVINHHLQET-SFTKESYKKYIKDYMKAIKARLEEHKPERVKPFMTGAAEQIKHILANFKNYQFFVGENMNPDGMVALLDFREDGVTPYMIFFKDGLEIEKC 172          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_THEAN (Translationally-controlled tumor protein homolog OS=Theileria annulata GN=TCTP PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.920e-15
Identity = 55/173 (31.79%), Postives = 87/173 (50.29%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSFPYKE-IEN----GILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSE---ERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKE 581
            M VY+DL + DE+ SD++ + +  +N     + +EV+   V +G  D  IG N                  VVD+ D F LQ  P   KK + +Y+K++I+ L   L E   ER + FK ++    K +L+   D +F+VGES+  +  LV+ YYK     P  +++ D L E
Sbjct:    1 MKVYRDLYSNDEVCSDAYDHLDPFDNPDLSSVAFEVKTSKVAKGEEDYGIGYNDEEGGDQMNVDPNVEV--VVDVVDKFALQSLP-LTKKDYSSYIKKYIQRLVATLQEKNPERVEPFKTSVSEFVKHVLANFDDFEFYVGESLDYEAGLVYGYYKGEEVSPRLVFLKDGLVE 170          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_PLAYO (Translationally-controlled tumor protein homolog OS=Plasmodium yoelii yoelii GN=TCTP PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 55/175 (31.43%), Postives = 88/175 (50.29%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSE---ERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVK 587
            M VY+D+ T DE+ SDS+    P+   E   I +EV+    ++G  D  I  N                  V+DI D+F+L    +  KK +  Y+K F++ +   L E   +R DIFK   +   K +L+   D +F++GES+  +  L+++YYK     P F+Y++D L E K
Sbjct:    1 MKVYKDIFTNDEVCSDSYIQEDPFGNPEFREIAFEVKSNKRIKGNDDYGIADNSEDAVDGMGADVEH----VIDIVDSFQLTST-SLSKKEYSAYVKNFMQRILKHLEEKKPDRVDIFKTKAQPLIKHILTNFDDFEFYMGESLDMEAGLIYSYYKGEEITPRFVYISDGLFEEK 170          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_PLABA (Translationally-controlled tumor protein homolog OS=Plasmodium berghei (strain Anka) GN=TCTP PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.393e-15
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQD---IFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVK 587
            M VY+D+ T DE+ SDS+    P+   E   I +EV+    ++G  D  I  N                  V+DI D+F+L    +  KK +  Y+K F++ +   L E++ D   IFK   +   K +L+   D +F++GES+  +  L+++YYK     P F+Y++D L E K
Sbjct:    1 MKVYKDIFTNDEVCSDSYIQEDPFGNAEFREIAFEVKSNKRIKGNDDYGIADNSEDAVDGMGADVEH----VIDIVDSFQLTST-SLSKKEYSAYVKNFMQRILKHLEEKKPDRVNIFKTKAQPLIKHILTNFDDFEFYMGESLDMEAGLIYSYYKGEEITPRFVYISDGLFEEK 170          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_USTMA (Translationally-controlled tumor protein homolog OS=Ustilago maydis GN=UM01283 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 49/158 (31.01%), Postives = 82/158 (51.90%), Query Frame = 3
Query:  123 LLSDSFPYKEIENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQD---IFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVK 587
            + SD +  K +E+ +++EV+   +V    DVDIGANPS               +V++I  +FRLQ    FDKK ++ Y+K ++K +  +L+E   D    F++      K ++   +D +FF GESM  +G +    Y+E    P  ++  D L+E K
Sbjct:    1 MCSDGYEMKLVED-VVYEVDAAKIVVSDGDVDIGANPSAEEAAEALENGAE--QVINIVHSFRLQSTQ-FDKKSYLAYLKGYMKSVKAKLAESNPDRVPAFEKGAAAFAKKIVGSFNDWEFFTGESMDPEGMVALLNYREDGVTPYLVFWKDGLRETK 154          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_PLACH (Translationally-controlled tumor protein homolog OS=Plasmodium chabaudi GN=TCTP PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.432e-14
Identity = 54/175 (30.86%), Postives = 88/175 (50.29%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQD---IFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVK 587
            M VY+D+ T DE+ SDS+    P+   E   I +EV+    ++G  D  I  N                  V+DI D+F+L    +  KK +  Y+K F++ +   L E++ D   IFK   +   K +L+   D +F++GES+  +  L+++YYK     P F+Y++D L E K
Sbjct:    1 MKVYKDIFTNDEVCSDSYAQEDPFGNPEFREIAFEVKSNKRIKGNDDYGIADNSEDAVEGMGADVEH----VIDIVDSFQLTST-SLSKKEYSAYVKNFMQRILKHLEEKKPDRVEIFKTKAQPLIKHILTNFDDFEFYMGESLDMEAGLIYSYYKGEEITPRFVYISDGLFEEK 170          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_THEPA (Translationally-controlled tumor protein homolog OS=Theileria parva GN=TCTP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.442e-14
Identity = 54/173 (31.21%), Postives = 87/173 (50.29%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSE---ERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKE 581
            M VY+DL + DE+ SD++    P+   + + + +EV+   V +G  D  IG N                  VVD+ D F LQ   +  KK + +Y++++I+ L   L E   ER + FK  +    K +L+   D +F+VGES+  +  LV+AYYK     P  +++ D L E
Sbjct:    1 MKVYKDLYSNDEVCSDAYDHHDPFDNADLSSVAFEVKTSKVPKGEEDYGIGYNDEEGADQMNVDPNVEM--VVDVVDKFGLQSL-SLTKKDYSSYIRKYIQRLVATLQEKNPERVEPFKTTVSDFVKHVLANFEDFEFYVGESLDYEAGLVYAYYKGEEVSPRLVFLKDGLVE 170          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_PLAF7 (Translationally-controlled tumor protein homolog OS=Plasmodium falciparum (isolate 3D7) GN=TCTP PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.442e-14
Identity = 53/175 (30.29%), Postives = 90/175 (51.43%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSEERQD---IFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVK 587
            M V++D+ T DE+ SDS+    P++  E   I +EV+    ++G  D  I  N                  V+DI D+F+L    AF KK +  Y+K +++ +   L E++ D   IFK   +   K +L+   D +F++GES+  +  ++++YYK     P F+Y++D L E K
Sbjct:    1 MKVFKDVFTNDEVCSDSYVQQDPFEVPEFREIAFEVKSNKRIKGNEDYGIADNSEDAVEGMGADVEH----VIDIVDSFQLTST-AFSKKEYSAYIKNYMQKVAKYLEEKKPDRVEIFKTKAQPFIKHILTNFDDFEFYMGESLDMEAGIIYSYYKGEEITPRFVYISDGLFEEK 170          
BLAST of CB293973 vs. ExPASy Swiss-Prot
Match: TCTP_PLAKN (Translationally-controlled tumor protein homolog OS=Plasmodium knowlesi GN=TCTP PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.189e-14
Identity = 53/175 (30.29%), Postives = 88/175 (50.29%), Query Frame = 3
Query:   87 MLVYQDLLTGDELLSDSF----PYKEIE-NGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXXKVVDIDDTFRLQEQPAFDKKPFVTYMKRFIKLLTPELSE---ERQDIFKRNIEGATKFLLSKLSDLQFFVGESMRDDGCLVFAYYKEGATDPTFLYMADALKEVK 587
            M VY+D+ T DE+ SDS+    P+   +   I +EV+    ++G  D  I  N                 +V+DI D+F+L    +  KK +  Y+K +++ +   L E   +R D+FK   +   K +L+   D +F++GES+  D  L ++YYK     P F+Y++D L E K
Sbjct:    1 MKVYKDVFTNDEVCSDSYNQEDPFGIADFREIAFEVKSNKRIKGNDDYGIADNSEEAVDGMGADVE----QVIDIVDSFQLTST-SLSKKEYSVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHILTNFDDFEFYMGESLDMDAGLTYSYYKGEEVTPRFVYISDGLYEEK 170          
The following BLAST results are available for this feature:
BLAST of CB293973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
TCTP_XENTR4.450e-1630.06Translationally-controlled tumor protein homolog O... [more]
TCTP_CHICK4.450e-1631.03Translationally-controlled tumor protein homolog O... [more]
TCTP_THEAN4.920e-1531.79Translationally-controlled tumor protein homolog O... [more]
TCTP_PLAYO6.426e-1531.43Translationally-controlled tumor protein homolog O... [more]
TCTP_PLABA8.393e-1530.86Translationally-controlled tumor protein homolog O... [more]
TCTP_USTMA1.096e-1431.01Translationally-controlled tumor protein homolog O... [more]
TCTP_PLACH1.432e-1430.86Translationally-controlled tumor protein homolog O... [more]
TCTP_THEPA2.442e-1431.21Translationally-controlled tumor protein homolog O... [more]
TCTP_PLAF72.442e-1430.29Translationally-controlled tumor protein homolog O... [more]
TCTP_PLAKN3.189e-1430.29Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_02ac06_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_02ac06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293973 ID=CB293973; Name=CB293973; organism=Citrus sinensis; type=EST; length=755bp
TCCGCTGCGTCTCTCTCTCTCTCTCTCTCTCCAGTTTTCTCCGTTGATTA
TTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAATCATGTTGGTCTATCA
AGATCTCCTCACCGGTGATGAGCTTCTCTCCGATTCTTTTCCCTACAAGG
AAATTGAGAATGGGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTACAA
GGAGCCGTTGATGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGA
TGAGGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTTGACATTGACG
ACACATTCAGGCTACAGGAGCAACCCGCTTTTGACAAGAAGCCGTTTGTA
ACATACATGAAGAGATTCATCAAGTTGCTGACGCCCGAGCTGAGTGAGGA
GAGGCAGGATATATTTAAGAGGAATATTGAGGGAGCGACCAAGTTCTTGC
TCTCCAAGCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGCATGCGTGAT
GATGGCTGTCTTGTCTTTGCTTACTACAAGGAAGGTGCGACCGACCCAAC
ATTTTTGTATATGGCTGATGCATTGAAGGAGGTGAAGTGCTAAGCTGGGC
TTCGAAGAGGAAGTGCCTGCTGTAGTTCTAGTTTTAATTATTGCCCGCGG
TTATTTTTATGTATCGTTTGTGCTGGTTAACTCGGGACTTGCGCTTGCTG
CTTTTTAGTTTTTATTTTGACATATCCACTATGTTTTTCTGCTCTTAATT
ATTGG
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