CB293984

Overview
NameCB293984
Unique NameCB293984
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293984_ssr12 microsatellite CB293984_ssr12:12..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8379 contig Csv1_Contig8379:67..856. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 14334_SOLLC (14-3-3 protein 4 OS=Solanum lycopersicum GN=TFT4 PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 5.679e-94
Identity = 173/231 (74.89%), Postives = 204/231 (88.31%), Query Frame = 3
Query:   96 TREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            +RE+ VYLAKLAEQAERYEEM+EFM+K V  +    ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE R NE+HV+ +KEYRSK+E +LS +C  IL LLE+NLIPSA+ +ESKVF+LKMKGDYHRY+AEFK G ERK A E+T+ +Y++AQDIA A+LAPTHPIRLGLALNFSVFYYEILN  D+AC++AKQAF+EAI+ELDTLGEESYKDSTLIMQLLR+ LTL
Sbjct:    5 SREENVYLAKLAEQAERYEEMIEFMEK-VAKTADVEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVNTIKEYRSKIEADLSKICDGILSLLESNLIPSASTAESKVFHLKMKGDYHRYLAEFKTGTERKEAAENTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTL 234          
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 14331_MAIZE (14-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=1 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 7.417e-94
Identity = 174/232 (75.00%), Postives = 205/232 (88.36%), Query Frame = 3
Query:   93 LTREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            L+RE+ VY+AKLAEQAERYEEMVEFM+K V  +  + ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEEGR NE+ V+L+K+YR K+E EL+ +C  IL+LLE +L+PS+TA ESKVFYLKMKGDY+RY+AEFK G ERK A E+TM +Y+AAQDIA A+LAPTHPIRLGLALNFSVFYYEILN  D+ACS+AKQAF+EAI+ELDTL EESYKDSTLIMQLLR+ LTL
Sbjct:    6 LSREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEGRGNEDRVTLIKDYRGKIETELTKICDGILKLLETHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTL 236          
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 14331_ARATH (14-3-3-like protein GF14 chi OS=Arabidopsis thaliana GN=GRF1 PE=1 SV=3)

HSP 1 Score: 343.584 bits (880), Expect = 7.417e-94
Identity = 170/230 (73.91%), Postives = 203/230 (88.26%), Query Frame = 3
Query:   99 REQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            R+++VY+AKLAEQAERYEEMVEFM+K V  +    ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE R N++HVSL+++YRSK+E ELSD+C  IL+LL+  L+P+A + +SKVFYLKMKGDYHRY+AEFK G ERK A E T+ +Y+AAQDIA ++LAPTHPIRLGLALNFSVFYYEILN  D+AC++AKQAF+EAIAELDTLGEESYKDSTLIMQLLR+ LTL
Sbjct:   10 RDEFVYMAKLAEQAERYEEMVEFMEK-VAKAVDKDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSLIRDYRSKIETELSDICDGILKLLDTILVPAAASGDSKVFYLKMKGDYHRYLAEFKSGQERKDAAEHTLTAYKAAQDIANSELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTL 238          
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 1433A_VICFA (14-3-3-like protein A OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.265e-93
Identity = 170/230 (73.91%), Postives = 201/230 (87.39%), Query Frame = 3
Query:   99 REQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            RE++VY+AKLAEQAERYEEMVEFM+K V  +  + ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE R N+EHVS++++YRSK+E ELS++C  IL+LL++ LIPSA   +SKVFYLKMKGDYHRY+AEFK G ERK A E T+ +Y++AQDIA  +L PTHPIRLGLALNFSVFYYEILN  D+AC +AKQAF+EAIAELDTLGEESYKDSTLIMQLLR+ LTL
Sbjct:    8 REEFVYMAKLAEQAERYEEMVEFMEK-VTAAVESEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDEHVSVIRDYRSKIETELSNICNGILKLLDSRLIPSAALGDSKVFYLKMKGDYHRYLAEFKSGAERKDAAESTLTAYKSAQDIANTELPPTHPIRLGLALNFSVFYYEILNSPDRACGLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTL 236          
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 14337_ARATH (14-3-3-like protein GF14 nu OS=Arabidopsis thaliana GN=GRF7 PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.265e-93
Identity = 172/231 (74.46%), Postives = 203/231 (87.88%), Query Frame = 3
Query:   96 TREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            +RE+ VYLAKLAEQAERYEEMVEFM+K V  +    ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE R N++HVS++K+YR K+E ELS +C  IL LL+++L+P+A+ +ESKVFYLKMKGDYHRY+AEFK G ERK A E T+ +Y++AQDIA ADLAPTHPIRLGLALNFSVFYYEILN  D+ACS+AKQAF+EAI+ELDTLGEESYKDSTLIMQLLR+ LTL
Sbjct:    4 SREENVYLAKLAEQAERYEEMVEFMEK-VAKTVDTDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSIIKDYRGKIETELSKICDGILNLLDSHLVPTASLAESKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLVAYKSAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTL 233          
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 14332_ARATH (14-3-3-like protein GF14 omega OS=Arabidopsis thaliana GN=GRF2 PE=1 SV=2)

HSP 1 Score: 342.813 bits (878), Expect = 1.265e-93
Identity = 170/230 (73.91%), Postives = 202/230 (87.83%), Query Frame = 3
Query:   99 REQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            RE++VY+AKLAEQAERYEEMVEFM+K V  +    ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE R N++HV+ ++EYRSK+E ELS +C  IL+LL++ LIP+A + +SKVFYLKMKGDYHRY+AEFK G ERK A E T+ +Y++AQDIA A+LAPTHPIRLGLALNFSVFYYEILN  D+AC++AKQAF+EAIAELDTLGEESYKDSTLIMQLLR+ LTL
Sbjct:    5 REEFVYMAKLAEQAERYEEMVEFMEK-VSAAVDGDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVTAIREYRSKIETELSGICDGILKLLDSRLIPAAASGDSKVFYLKMKGDYHRYLAEFKTGQERKDAAEHTLAAYKSAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTL 233          
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 14336_ORYSJ (14-3-3-like protein GF14-F OS=Oryza sativa subsp. japonica GN=GF14F PE=1 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 2.158e-93
Identity = 173/235 (73.62%), Postives = 205/235 (87.23%), Query Frame = 3
Query:   84 PDHLTREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            P   +RE+ VY+AKLAEQAERYEEMVEFM+K V  +T   ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE R NE +V+ +KEYRS++E ELS +C  IL+LL+++L+PSATA+ESKVFYLKMKGDYHRY+AEFK G ERK A E+T+ +Y++AQDIA ADL  THPIRLGLALNFSVFYYEILN  D+AC++AKQAF++AIAELDTLGEESYKDSTLIMQLLR+ LTL
Sbjct:    3 PAEASREENVYMAKLAEQAERYEEMVEFMEK-VAKTTDVGELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEAYVASIKEYRSRIETELSKICDGILKLLDSHLVPSATAAESKVFYLKMKGDYHRYLAEFKSGAERKEAAENTLVAYKSAQDIALADLPTTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTL 236          
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 14332_MAIZE (14-3-3-like protein GF14-12 OS=Zea mays GN=GRF2 PE=2 SV=2)

HSP 1 Score: 342.043 bits (876), Expect = 2.158e-93
Identity = 173/232 (74.57%), Postives = 205/232 (88.36%), Query Frame = 3
Query:   93 LTREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            L+RE+ VY+AKLAEQAERYEEMVEFM+K V  +  + ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEEGR NE+ V+L+K+YR K+E EL+ +C  IL+LLE++L+PS+TA ESKVFYLKMKGDY+RY+AEFK G ERK A E+TM +Y+AAQDIA A+LAPTHPIRLGLALNFSVFYYEILN  D+ACS+AKQAF+EAI+ELDTL EESYKDSTLIMQLL + LTL
Sbjct:    6 LSREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEGRGNEDRVTLIKDYRGKIETELTKICDGILKLLESHLVPSSTAPESKVFYLKMKGDYYRYLAEFKTGAERKDAAENTMVAYKAAQDIALAELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAISELDTLSEESYKDSTLIMQLLHDNLTL 236          
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 14333_ARATH (14-3-3-like protein GF14 psi OS=Arabidopsis thaliana GN=GRF3 PE=1 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 2.819e-93
Identity = 171/231 (74.03%), Postives = 202/231 (87.45%), Query Frame = 3
Query:   96 TREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            TRE+ VY+AKLAEQAERYEEMVEFM+K V  +    EL+VEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE + NE+HV+++K+YR K+E ELS +C  IL +LEA+LIPSA+ +ESKVFYLKMKGDYHRY+AEFK G ERK A E T+ +Y++A DIA A+LAPTHPIRLGLALNFSVFYYEILN  D+ACS+AKQAF++AIAELDTLGEESYKDSTLIMQLLR+ LTL
Sbjct:    3 TREENVYMAKLAEQAERYEEMVEFMEK-VAKTVDVEELSVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEDHVAIIKDYRGKIESELSKICDGILNVLEAHLIPSASPAESKVFYLKMKGDYHRYLAEFKAGAERKEAAESTLVAYKSASDIATAELAPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDDAIAELDTLGEESYKDSTLIMQLLRDNLTL 232          
BLAST of CB293984 vs. ExPASy Swiss-Prot
Match: 14334_ARATH (14-3-3-like protein GF14 phi OS=Arabidopsis thaliana GN=GRF4 PE=1 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 3.681e-93
Identity = 171/240 (71.25%), Postives = 202/240 (84.17%), Query Frame = 3
Query:   69 MATTVPDHLTREQYVYLAKLAEQAERYEEMVEFMQKLVVGSTPAAELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNEEHVSLVKEYRSKVEKELSDVCASILRLLEANLIPSATASESKVFYLKMKGDYHRYMAEFKIGDERKAAGEDTMQSYEAAQDIAGADLAPTHPIRLGLALNFSVFYYEILNQSDKACSMAKQAFEEAIAELDTLGEESYKDSTLIMQLLREYLTL 788
            MA        RE++VYLAKLAEQAERYEEMVEFM+K V  +    ELTVEERNLLSVAYKNVIG+ RA+WRI+SSIEQKEE R N++HV+ +++YRSK+E ELS +C  IL+LL+  L+P++   +SKVFYLKMKGDYHRY+AEFK G ERK A E T+ +Y+AAQDIA A+LAPTHPIRLGLALNFSVFYYEILN  D+AC++AKQAF+EAIAELDTLGEESYKDSTLIMQLLR+ LTL
Sbjct:    1 MAAPPASSSAREEFVYLAKLAEQAERYEEMVEFMEK-VAEAVDKDELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVTTIRDYRSKIESELSKICDGILKLLDTRLVPASANGDSKVFYLKMKGDYHRYLAEFKTGQERKDAAEHTLTAYKAAQDIANAELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTL 239          
The following BLAST results are available for this feature:
BLAST of CB293984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
14334_SOLLC5.679e-9474.8914-3-3 protein 4 OS=Solanum lycopersicum GN=TFT4 P... [more]
14331_MAIZE7.417e-9475.0014-3-3-like protein GF14-6 OS=Zea mays GN=GRF1 PE=... [more]
14331_ARATH7.417e-9473.9114-3-3-like protein GF14 chi OS=Arabidopsis thalia... [more]
1433A_VICFA1.265e-9373.9114-3-3-like protein A OS=Vicia faba PE=2 SV=1[more]
14337_ARATH1.265e-9374.4614-3-3-like protein GF14 nu OS=Arabidopsis thalian... [more]
14332_ARATH1.265e-9373.9114-3-3-like protein GF14 omega OS=Arabidopsis thal... [more]
14336_ORYSJ2.158e-9373.6214-3-3-like protein GF14-F OS=Oryza sativa subsp. ... [more]
14332_MAIZE2.158e-9374.5714-3-3-like protein GF14-12 OS=Zea mays GN=GRF2 PE... [more]
14333_ARATH2.819e-9374.0314-3-3-like protein GF14 psi OS=Arabidopsis thalia... [more]
14334_ARATH3.681e-9371.2514-3-3-like protein GF14 phi OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_04af04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04af04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293984 ID=CB293984; Name=CB293984; organism=Citrus sinensis; type=EST; length=790bp
GCCCGATGCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTATCACACTT
TCAGAGCCTGTGAAAAAGATGGCGACAACAGTTCCGGACCACCTGACGAG
AGAGCAGTACGTGTACTTAGCCAAGCTAGCCGAGCAAGCCGAGCGTTACG
AAGAGATGGTGGAGTTCATGCAGAAGCTGGTTGTCGGCTCGACTCCAGCC
GCCGAGCTGACGGTCGAGGAGCGAAACCTCCTCTCAGTGGCCTACAAGAA
CGTAATCGGCTCACTCCGCGCCGCGTGGCGCATCGTGTCGTCGATCGAGC
AGAAGGAGGAGGGGAGGAAGAACGAGGAACACGTGTCGCTCGTGAAAGAG
TACAGATCGAAGGTGGAGAAGGAGCTTTCGGATGTGTGCGCGAGTATTTT
GAGGTTGTTGGAAGCGAATTTGATTCCGTCGGCTACGGCGAGTGAGTCGA
AAGTGTTTTATTTGAAAATGAAGGGAGATTATCATCGTTACATGGCCGAG
TTTAAGATTGGCGATGAGCGGAAAGCCGCCGGTGAAGACACTATGCAATC
TTACGAAGCTGCTCAGGATATTGCTGGGGCTGATCTCGCGCCGACGCATC
CGATAAGGCTGGGATTAGCTCTCAATTTCTCGGTGTTTTACTACGAGATT
CTCAATCAATCTGATAAGGCATGCAGCATGGCTAAGCAGGCATTTGAGGA
AGCAATTGCTGAGCTAGACACTTTGGGAGAAGAATCCTACAAGGACAGCA
CCCTCATTATGCAACTCCTAAGGGAGTACCTCACTCTTTG
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