CB293989

Overview
NameCB293989
Unique NameCB293989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293989_ssr40 microsatellite CB293989_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2838 contig Csv1_Contig2838:38..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: MPCP_YEAST (Mitochondrial phosphate carrier protein OS=Saccharomyces cerevisiae GN=MIR1 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.647e-30
Identity = 69/187 (36.90%), Postives = 104/187 (55.61%), Query Frame = 2
Query:  266 VVAAPSEPGKIEMYSPAFYAACTVGGILSCGLTHTAVTPLDLVKCNMQIDPVKY-KSISSGFGVLLKEQGIRGFFRGWVPTLLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLGDGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            V AAP+ P     YS + Y    + G + CG TH+++ P+D+VK  +Q++P  Y K +   F  ++  +G      G+ PTLLGYS QGA              D  G + A++YK  +Y+  +A AEF+AD+ALCP EA ++R+ +QP FA GL  G  + +K +G    Y G  P+  +QIPY +
Sbjct:    3 VSAAPAIP----QYSVSDYMKFALAGAIGCGSTHSSMVPIDVVKTRIQLEPTVYNKGMVGSFKQIIAGEGAGALLTGFGPTLLGYSIQGAFKFGGYEVFKKFFIDNLGYDTASRYKNSVYMGSAAMAEFLADIALCPLEATRIRLVSQPQFANGLVGGFSRILKEEGIGSFYSGFTPILFKQIPYNI 185          
BLAST of CB293989 vs. ExPASy Swiss-Prot
Match: UCPB_DICDI (Mitochondrial substrate carrier family protein ucpB OS=Dictyostelium discoideum GN=ucpB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.712e-11
Identity = 54/175 (30.86%), Postives = 79/175 (45.14%), Query Frame = 2
Query:  341 GILSCGLTHTAVTPLDLVKCNMQIDP--VKYKSISSGFGVLLKEQGIRGFFRGWVPT-----LLGYSAQGACXXXXXXXXXXXXSDIAGPEYAAKYKTLIYLAGSASAEFIADVALCPFEAVKVRVQTQPGFARGLG-------DGLPKFVKSDGALGLYKGIVPLWGRQIPYTM 823
            G LS  L     +P DL+K  MQ     VKY SISS F  ++ ++GI+G ++G  PT     LL  S   +               + G +        +++  S  A  IA +   P + VK R+  QP  + G+G       D   K  +S+G  GLYKG +P W R  P+T+
Sbjct:  110 GALSGALGACITSPTDLIKVRMQASSKGVKYDSISSAFKEIIAKEGIKGLWKGVGPTTQRAALLTASQIPSYDHIKHMILDHGIIQVDGLQ--------VHIVSSIFAGLIASITTSPVDLVKTRIMNQPFDSNGVGLIYKSSYDCFKKTFQSEGISGLYKGFLPNWFRIGPHTI 276          
The following BLAST results are available for this feature:
BLAST of CB293989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MPCP_YEAST1.647e-3036.90Mitochondrial phosphate carrier protein OS=Sacchar... [more]
UCPB_DICDI1.712e-1130.86Mitochondrial substrate carrier family protein ucp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05aa08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05aa08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293989 ID=CB293989; Name=CB293989; organism=Citrus sinensis; type=EST; length=823bp
GCCCATTGAAGGAGAAGAGAAAGAGAAAATTAGAAGAATTCTCTCTCTCT
CGCTCTTTTTCTCTATAATTCAATCAAGCTTTTAACTCTCAAAATCAAAT
TTCAAAAATTCCGAAATGGCCCTCACAGAATCTTATAGGAAAAACTCTCT
GATACCAAGCTACCTCTACTCCTCCCAAACATCCTTCCCGTCCACGGCGG
CTTTCAATGGAGCGGCAGCAGCCGCCACGTCGCCGGCTACTCCATCCACG
GCGAGGAGGAACTTCGTTGTTGCGGCACCGAGCGAGCCAGGGAAGATAGA
GATGTACTCCCCTGCATTCTACGCCGCTTGTACCGTCGGCGGGATCCTCA
GCTGCGGCCTCACTCACACGGCCGTCACTCCTCTTGACCTCGTCAAGTGC
AATATGCAGATTGATCCTGTTAAGTACAAAAGCATATCATCTGGTTTTGG
AGTTTTGCTCAAGGAACAGGGAATCAGGGGCTTCTTCAGGGGATGGGTAC
CTACCTTGCTTGGTTACAGCGCCCAAGGTGCTTGCAAGTTTGGATTCTAC
GAGTTCTTCAAGAAGTACTACTCTGACATTGCTGGTCCAGAGTATGCTGC
TAAGTACAAGACTTTAATCTACCTTGCTGGCTCTGCTTCTGCTGAGTTCA
TTGCTGATGTTGCTCTTTGCCCCTTTGAGGCCGTGAAGGTCCGTGTTCAG
ACTCAGCCTGGTTTTGCCAGAGGTTTGGGTGATGGACTTCCCAAGTTTGT
TAAATCTGATGGCGCTCTTGGTTTGTACAAGGGTATTGTTCCTCTTTGGG
GGCGTCAGATTCCATATACTATG
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