CB293991

Overview
NameCB293991
Unique NameCB293991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4972_SORBI (UPF0497 membrane protein Sb02g009660 OS=Sorghum bicolor GN=Sb02g009660 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.232e-27
Identity = 65/146 (44.52%), Postives = 86/146 (58.90%), Query Frame = -3
Query:  310 RENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIP-IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 744
            R ++ G D+ LR LLF+ TL  +IV+ATAKQT  +    IP + VS  AKF  SPA IY + A  V C YS++T L SL ++S  +  K L L     DV+                +IGLKGN+H+ WTKICN+Y  +CRHIGS+
Sbjct:   30 RSSFSGADLALRALLFAVTLAGLIVLATAKQTVSIPVPEIPGLLVSRPAKFNHSPALIYLLVAQCVTCFYSLLTALTSLKLISGSSPTKTLFL-LVLLDVLYAAIMASATGSAGGVAWIGLKGNTHTNWTKICNIYGNFCRHIGSS 174          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4974_MAIZE (UPF0497 membrane protein 4 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.535e-25
Identity = 65/165 (39.39%), Postives = 90/165 (54.55%), Query Frame = -3
Query:  310 GTHTMASEAPAKYEDQRAVRENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIP-IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 801
            G+      AP+      A   +  G D+ LRVLLF+ TL  ++V+ATA+QT  V    IP + +S+ AKF DSPA IY + AL V C YS+++   +   +   +S  R L     +DV                 +IGLKGNSH+ W KICN+Y K+CRHIGS+
Sbjct:   11 GSGKQTDAAPSPPAAAAAACRSLSGADLALRVLLFAVTLSGLVVLATAEQTVRVPVPQIPGLVLSLPAKFKDSPALIYLLVALCVTCFYSLLSTAFTSLKLLFGSSPSRTLFLLVLFDVFYAAIMASATGSAGGVAWIGLKGNSHTNWNKICNIYGKFCRHIGSS 175          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4971_PICSI (UPF0497 membrane protein 1 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.636e-20
Identity = 48/139 (34.53%), Postives = 80/139 (57.55%), Query Frame = -3
Query:  322 NYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRH 738
            ++F +D  LR+L+  +T  + IVM T KQT +     +PI   + AK+  SPAF++FV A +VAC Y++++++   S+  K  S    +   +  D+VM+              Y+G KGNSH++W K+C +YD++C H
Sbjct:   36 SFFVVDFSLRLLVIGSTFTAAIVMGTNKQTAI-----LPIVGPLSAKYQYSPAFVFFVIANAVACGYTLLSLI--FSITGKFTSTPLSVFLLSVTDLVMVALVSAGVSAAAAIAYVGYKGNSHTQWGKVCGIYDRFCHH 167          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497B_SOYBN (UPF0497 membrane protein 11 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.476e-17
Identity = 53/145 (36.55%), Postives = 83/145 (57.24%), Query Frame = -3
Query:  301 DVGLRVLLFSATLVSVIVMATAKQTELV----SPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 723
            D+ LR+L F+ TLV+ IV+A  KQT+LV    S +  P+ V + AK+    AF+YF+   ++AC Y+ +++L  L++V++  S K L    A  D  M+             G +G KGNSH  W K+CNV+ K+C  + ++ GV
Sbjct:   24 DLLLRLLAFTVTLVAAIVIAVDKQTKLVPIQLSDSFPPLNVPLTAKWHQMSAFVYFLVTNAIACTYAAMSLL--LALVNRGKS-KGLWTLIAVLDTFMVALLFSGNGAAAAVGILGYKGNSHVNWNKVCNVFGKFCDQMAASIGV 165          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497A_SOYBN (UPF0497 membrane protein 10 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.901e-16
Identity = 51/145 (35.17%), Postives = 83/145 (57.24%), Query Frame = -3
Query:  301 DVGLRVLLFSATLVSVIVMATAKQTELV----SPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 723
            D+ LR+L F+ TLV+ IV+A  KQT++V    S +  P+ V + AK+    A +YF+   ++AC Y+++++L  L++V++  S K L    A  D  M+             G +G KGNSH  W K+CNV+ K+C  + ++ GV
Sbjct:   23 DLLLRLLAFTVTLVAAIVIAVDKQTKVVPIQLSDSLPPLDVPLTAKWHQMSAIVYFLVTNAIACTYAVLSLL--LALVNRGKS-KGLWTLIAVLDAFMVALLFSGNGAAAAVGVLGYKGNSHVNWNKVCNVFGKFCDQMAASIGV 164          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4974_VITVI (UPF0497 membrane protein 4 OS=Vitis vinifera GN=GSVIVT00019813001 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.440e-15
Identity = 50/145 (34.48%), Postives = 78/145 (53.79%), Query Frame = -3
Query:  301 DVGLRVLLFSATLVSVIVMATAKQTELVS----PAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 723
            D+ LRV+  + TLV+ +++   KQT++VS    P   P+ V V AK+    AF+YFV + ++AC Y+ +++L S   V      K L L     D+VM+             G +G +GNS  RW K+CNV+ K+C  +  A G+
Sbjct:   31 DLVLRVVALALTLVAAVLLGVDKQTKVVSLQLLPTLPPMDVPVTAKWRYLSAFVYFVVSNAIACSYAALSLLLS---VGNSKGNKGLGLAITVMDLVMVALLFSSNGAAGAIGLMGYEGNSRVRWGKVCNVFGKFCNQVAVALGL 172          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4975_MAIZE (UPF0497 membrane protein 5 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 48/144 (33.33%), Postives = 73/144 (50.69%), Query Frame = -3
Query:  310 GIDVGLRVLLFSATLVSVIVMATAKQTEL----VSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 729
            G  V LRV + +ATLVS +VM   +QT      V+ A  P+ V + A ++ S AF+YFV A ++ CL+S   + A  S        +  ++     D++ L             G +G +GNSH RW K+CNVY ++C    +A
Sbjct:   56 GCSVALRVFVLAATLVSAVVMGVDRQTSTIRITVTDALPPLEVPLTANWSYSSAFVYFVVANAMVCLFSAAALAACRS--------RAAMVPVMVGDLLALALLYSAVGAAAEFGILGERGNSHVRWPKVCNVYGRFCERAMAA 191          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497Q_ARATH (UPF0497 membrane protein At4g15620 OS=Arabidopsis thaliana GN=At4g15620 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.901e-14
Identity = 42/138 (30.43%), Postives = 77/138 (55.80%), Query Frame = -3
Query:  328 GIDVGLRVLLFSATLVSVIVMATAKQTELVS----PAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYC 729
            G+++ +RVL    T+ +  V+  AKQT++VS    P   P+ ++  AK +   AF+Y ++  ++AC Y+ I++  ++ ++S+   +K+LL+     D+VM+             G +GL GN H  W K+C V+ K+C
Sbjct:   26 GVELTMRVLALILTMAAATVLGVAKQTKVVSIKLIPTLPPLDITTTAKASYLSAFVYNISVNAIACGYTAISI--AILMISRGRRSKKLLMVVLLGDLVMVALLFSGTGAASAIGLMGLHGNKHVMWKKVCGVFGKFC 161          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497R_ARATH (UPF0497 membrane protein At4g15630 OS=Arabidopsis thaliana GN=At4g15630 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13
Identity = 44/147 (29.93%), Postives = 78/147 (53.06%), Query Frame = -3
Query:  301 GIDVGLRVLLFSATLVSVIVMATAKQTELVS----PAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 729
            G+++ +RVL    T+V+  V+  AKQT++V     P   P+ VS  AK +   AF+Y ++A ++AC Y+ I+++  + ++SK   +K LL+     D++M+             G +G  GN H  W K+C V+ K+C     +  +
Sbjct:   26 GLELTMRVLALVLTMVAATVLGVAKQTKVVPIKLIPTLPPLNVSTTAKASYLSAFVYNISANAIACGYTAISIV--IVMISKGKRSKSLLMAVLIGDLMMVALLFSSTGAAGAIGLMGRHGNKHVMWKKVCGVFGKFCNQAAVSVAI 170          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4975_VITVI (UPF0497 membrane protein 5 OS=Vitis vinifera GN=GSVIVT00035198001 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13
Identity = 46/139 (33.09%), Postives = 76/139 (54.68%), Query Frame = -3
Query:  310 LRVLLFSATLVSVIVMATAKQTE--LVSPAGI-PIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRL-LLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 714
            LRV+ F AT  + IVM   ++T+  LV   G  PIR ++KAKF  +PAF++FV A  +A +Y+++  +  + V  +    K L L+  +  D+V++               +G  GNSH++W KIC+ ++ +C   G A
Sbjct:   33 LRVVAFLATASATIVMGLNQETKTLLVGTIGTTPIRATLKAKFQHTPAFVFFVVANGLASVYNLV--MLGVDVFGRKLDCKGLRLVIISILDMVIVAVVAAGASSAAFMAELGKNGNSHAKWNKICDKFESFCHQGGGA 169          
The following BLAST results are available for this feature:
BLAST of CB293991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
U4972_SORBI6.232e-2744.52UPF0497 membrane protein Sb02g009660 OS=Sorghum bi... [more]
U4974_MAIZE1.535e-2539.39UPF0497 membrane protein 4 OS=Zea mays PE=2 SV=1[more]
U4971_PICSI9.636e-2034.53UPF0497 membrane protein 1 OS=Picea sitchensis PE=... [more]
U497B_SOYBN4.476e-1736.55UPF0497 membrane protein 11 OS=Glycine max PE=2 SV... [more]
U497A_SOYBN2.901e-1635.17UPF0497 membrane protein 10 OS=Glycine max PE=2 SV... [more]
U4974_VITVI1.440e-1534.48UPF0497 membrane protein 4 OS=Vitis vinifera GN=GS... [more]
U4975_MAIZE6.050e-1433.33UPF0497 membrane protein 5 OS=Zea mays PE=2 SV=1[more]
U497Q_ARATH7.901e-1430.43UPF0497 membrane protein At4g15620 OS=Arabidopsis ... [more]
U497R_ARATH1.032e-1329.93UPF0497 membrane protein At4g15630 OS=Arabidopsis ... [more]
U4975_VITVI1.032e-1333.09UPF0497 membrane protein 5 OS=Vitis vinifera GN=GS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05ah12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293991 ID=CB293991; Name=CB293991; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTCGTCAAAGCACATCTAATATTAATGGCCCTTTT
GGATCATACTACCTACGTACGTACCATGTATATATCCAAGCTCTCTCTCT
CAGGCATACAATTCATCTACACGTCTGATGATTGAAAATTCGAAAATAAA
TAAAACACTAGAGTACACAATACAGACAATTAACTGTAGAAACAAAGATA
CATAATCTAAATAATGATGTGATCAATCACGAATGCGCAAGTAAAGGGAG
TAAGAGGAGTGCATGGAGAGTAGCACGAGAAGAACAGCGGCGAGGAGTGA
GACCCCGGTGGCGCTGCCTATGTGTCTGCAGTACTTGTCGTAAACGTTGC
ATATCTTTGTCCATCTCGAGTGGCTGTTGCCCTTTAATCCGATATACCCC
ACCCCTCCCGATGCCCCAGTTGCCGATGCTACGATCCCCAACATCACCAC
GTCCCAGAATGCGAAATAGAGCAGCAACCGTTTTGCGGAAGCTGGCTTGG
AGACGACCGAAAGTGATGCAAGCATTGTGATGATACTGTATAGGCAAGCA
ACCGATAGTGCCGCGACAAAATATATGAAAGCCGGGGAATCGGTAAACTT
GGCTTTAACGCTGACTCTAATAGGAATCCCAGCTGGGCTTACGAGCTCAG
TTTGCTTGGCGGTAGCCATGACGATTACAGAAACGAGTGTTGCTGAAAAC
AGCAATACTCTAAGACCCACATCGATGCCAAAATAGTTTTCGCGCACCGC
CCTTTGATCTTCATATTTCGCTGGAGCTTCAGACGCCATGGTATGTGTTC
CTCGTG
back to top