CB293991

Overview
NameCB293991
Unique NameCB293991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293991_ssr91 microsatellite CB293991_ssr91:91..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4973_SORBI (UPF0497 membrane protein Sb03g014480 OS=Sorghum bicolor GN=Sb03g014480 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.032e-13
Identity = 47/146 (32.19%), Postives = 74/146 (50.68%), Query Frame = -3
Query:  328 RAVRENYFGIDVGLRVLLFSATLVSVIVMATAKQTELV----SPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYC 753
            RA +    G  V LRV + ++TLVS +VM   +QT  +    + A  P+ V + A ++ S AF+YFV A ++ CL+S   + A  S        +  ++     D++ L             G +G +GNSH RW K+CNVY ++C
Sbjct:   50 RAAQAPVDGCSVALRVFVVASTLVSAVVMGVDRQTRTIQITITDALPPLEVPLTANWSYSSAFVYFVVANAMVCLFSAAALAACRS--------RAAMVPVMVGDLLALALLYSAVGAAAEFGILGERGNSHVRWAKVCNVYGRFC 187          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U49B7_ARATH (UPF0497 membrane protein At5g44550 OS=Arabidopsis thaliana GN=At5g44550 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12
Identity = 46/136 (33.82%), Postives = 71/136 (52.21%), Query Frame = -3
Query:  322 VGLRVLLFSATLVSVIVMATAKQTE--LVSPAG-IPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRH 720
            +GLR+L FSATL + IVM   K+T+  +V   G  PI+ +  AKF  +PAF++FV A ++   ++++ M+A      K       LL  A  D++ +               +G  GN H+RW KIC+ +  YC H
Sbjct:   20 LGLRLLAFSATLSAAIVMGLNKETKTFIVGKVGNTPIQATFTAKFDHTPAFVFFVVANAMVSFHNLL-MIALQIFGGKMEFTGFRLLSVAILDMLNVTLISAAANAAAFMAEVGKNGNKHARWDKICDRFATYCDH 154          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497T_ARATH (UPF0497 membrane protein At4g20390 OS=Arabidopsis thaliana GN=At4g20390 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.946e-12
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = -3
Query:  322 VGLRVLLFSATLVSVIVMATAKQTELVSPAGI---PIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRL-LLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRH 720
            +GLR+  F ATL + IVM+  K+T+ +  A I   PI+ ++ AKF  +PAF++FV A  +   ++++ ++  + + S+    K L LL  A  D++                 +G  GN H++W K+C+ +  YC H
Sbjct:   20 LGLRIFAFMATLAAAIVMSLNKETKTLVVATIGTVPIKATLTAKFQHTPAFVFFVIANVMVSFHNLLMIV--VQIFSRKLEYKGLRLLSIAILDMLNATLVSAAANAAVFVAELGKNGNKHAKWNKVCDRFTTYCDH 154          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497E_SORBI (UPF0497 membrane protein Sb06g018970 OS=Sorghum bicolor GN=Sb06g018970 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 49/145 (33.79%), Postives = 72/145 (49.66%), Query Frame = -3
Query:  304 DVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIR---VSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKP-ASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHI-GSATG 723
            DV LR L   AT+ S I M T  +T       +P     +  +AK++D P+F +FVAA +V C Y ++++  S+  + +P A   RL+L   F+D VML              Y+  KGN  + W  IC  +D +C  I GS  G
Sbjct:   34 DVFLRFLSIVATIASAISMGTTNET-------LPFFTQFIQFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHIIRPRARYSRLIL--VFFDAVMLALLTAGASAAAAIVYLAHKGNVRANWFAICQQFDSFCERISGSLIG 169          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4978_VITVI (UPF0497 membrane protein 8 OS=Vitis vinifera GN=GSVIVT00018013001 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.320e-12
Identity = 42/139 (30.22%), Postives = 73/139 (52.52%), Query Frame = -3
Query:  319 YFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHI 735
            + G  + LR+L  +ATL +  +M T+KQT  V        + V+AK++ S AF +F  A ++AC  S++T+  + S+  + ++  +    F   D+ M+             GY+G  GN+H+ W  IC+ +D+YC  I
Sbjct:   20 FLGAHICLRILTVTATLTAAWMMITSKQTVEV------YGIQVEAKYSYSSAFKFFSYANAIACGCSVLTLFPAFSLFYRGSTPMKFFFLFLH-DLCMMSLVLAGCAAATAIGYVGRYGNNHAGWMAICDQFDEYCNRI 151          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4976_VITVI (UPF0497 membrane protein 6 OS=Vitis vinifera GN=GSVIVT00023588001 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.320e-12
Identity = 41/136 (30.15%), Postives = 72/136 (52.94%), Query Frame = -3
Query:  319 LRVLLFSATLVSVIVMATAKQTELVSPAGIP----IRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHI 714
            LR+L    TL++ +V    KQT+++    I     + V V AK++D  AF+Y V + ++AC Y+ I+++  ++++ +     R+L      D+ M+             G +G  GNSH  W K+CNV+D +C H+
Sbjct:   37 LRILGLLLTLIAAVVAGVDKQTKIIPLTLIKTLPSLHVPVTAKWSDMSAFVYLVVSNAIACSYAAISLVL-VTMLGRRGKGGRVLAVIVL-DLHMVGLLFSANGAATAVGVLGQYGNSHVEWKKVCNVFDSFCHHL 170          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497E_SOYBN (UPF0497 membrane protein 14 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.336e-12
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = -3
Query:  310 VGLRVLLFSATLVSVIVMATAKQTELVSPAGI---PIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLL-YFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 720
            + LRV+ F AT  + +VMA  KQT+ +  A I   P+ +++ A F  +PAFI+FV   ++A  Y+++ +   + ++      K L L   A  DV+ +               +G  GNSH+RW KIC+ ++ YC   G A
Sbjct:   28 LSLRVVAFFATASATLVMAFNKQTKGMVVATIGTNPVTITLTAMFQHTPAFIFFVIVNAIASFYNLLVI--GVEILGPQYDYKGLRLGLIAILDVMTMALAATGDGAATFMAELGRNGNSHARWDKICDKFEAYCNRGGVA 166          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497C_RICCO (UPF0497 membrane protein 12 OS=Ricinus communis GN=RCOM_0680180 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.336e-12
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = -3
Query:  310 QRAVRENYFGIDVGLRVLLFSATLVSVIVMATAKQTELV----SPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 756
            +R  R N F +   LRVL F  T  + IV     QTE V    + +  P+ V V AK+    AF++FV + ++AC Y+ I+++ S          K ++      D++M+             G +G KGNSH +W K+CNV+ K+C  + ++
Sbjct:   22 ERGGRTNSFLV---LRVLAFVLTSTAAIVHGVNNQTETVPIQLTSSMPPLYVPVVAKWHYLSAFVFFVVSNAIACSYAAISVMLSF------CGKKSMVPIILTLDLLMVALLFSSNGAATAIGVMGYKGNSHVKWNKVCNVFGKFCNQVAAS 165          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4971_ORYSJ (UPF0497 membrane protein Os04g0460400 OS=Oryza sativa subsp. japonica GN=Os04g0460400 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 47/166 (28.31%), Postives = 76/166 (45.78%), Query Frame = -3
Query:  304 MASEAPAKYEDQRAVRENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIR---VSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHI-GSATG 789
            ++S+AP        V      +D  LR +    T+ S I M T  +T       +P     +  +AK++D P+F +FVAA +V C Y ++++  S+  + +P  A+   L+  F+D  ML              Y+  KGN  + W  IC  +D +C  I GS  G
Sbjct:    6 ISSKAPLVAPVAAGVNRAVAVVDTFLRFIAIIGTIGSAIAMGTTNET-------LPFFTQFIQFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRP-RARYSRLFLVFFDTAMLALLTAGASAAAAIVYLAHKGNVRANWFSICQQFDSFCERISGSLIG 163          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4971_ORYSI (UPF0497 membrane protein 1 OS=Oryza sativa subsp. indica GN=H0219H12.8 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.395e-12
Identity = 47/166 (28.31%), Postives = 76/166 (45.78%), Query Frame = -3
Query:  304 MASEAPAKYEDQRAVRENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIR---VSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHI-GSATG 789
            ++S+AP        V      +D  LR +    T+ S I M T  +T       +P     +  +AK++D P+F +FVAA +V C Y ++++  S+  + +P  A+   L+  F+D  ML              Y+  KGN  + W  IC  +D +C  I GS  G
Sbjct:    6 ISSKAPLVAPVAAGVNRAVAVVDTFLRFIAIIGTIGSAIAMGTTNET-------LPFFTQFIQFEAKYSDLPSFTFFVAANAVVCTYLVLSIPLSIVHILRP-RARYSRLFLVFFDTAMLALLTAGASAAAAIVYLAHKGNVRANWFSICQQFDSFCERISGSLIG 163          
The following BLAST results are available for this feature:
BLAST of CB293991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
U4973_SORBI1.032e-1332.19UPF0497 membrane protein Sb03g014480 OS=Sorghum bi... [more]
U49B7_ARATH1.946e-1233.82UPF0497 membrane protein At5g44550 OS=Arabidopsis ... [more]
U497T_ARATH1.946e-1230.66UPF0497 membrane protein At4g20390 OS=Arabidopsis ... [more]
U497E_SORBI2.542e-1233.79UPF0497 membrane protein Sb06g018970 OS=Sorghum bi... [more]
U4978_VITVI3.320e-1230.22UPF0497 membrane protein 8 OS=Vitis vinifera GN=GS... [more]
U4976_VITVI3.320e-1230.15UPF0497 membrane protein 6 OS=Vitis vinifera GN=GS... [more]
U497E_SOYBN4.336e-1231.91UPF0497 membrane protein 14 OS=Glycine max PE=2 SV... [more]
U497C_RICCO4.336e-1230.72UPF0497 membrane protein 12 OS=Ricinus communis GN... [more]
U4971_ORYSJ7.395e-1228.31UPF0497 membrane protein Os04g0460400 OS=Oryza sat... [more]
U4971_ORYSI7.395e-1228.31UPF0497 membrane protein 1 OS=Oryza sativa subsp. ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05ah12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293991 ID=CB293991; Name=CB293991; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTCGTCAAAGCACATCTAATATTAATGGCCCTTTT
GGATCATACTACCTACGTACGTACCATGTATATATCCAAGCTCTCTCTCT
CAGGCATACAATTCATCTACACGTCTGATGATTGAAAATTCGAAAATAAA
TAAAACACTAGAGTACACAATACAGACAATTAACTGTAGAAACAAAGATA
CATAATCTAAATAATGATGTGATCAATCACGAATGCGCAAGTAAAGGGAG
TAAGAGGAGTGCATGGAGAGTAGCACGAGAAGAACAGCGGCGAGGAGTGA
GACCCCGGTGGCGCTGCCTATGTGTCTGCAGTACTTGTCGTAAACGTTGC
ATATCTTTGTCCATCTCGAGTGGCTGTTGCCCTTTAATCCGATATACCCC
ACCCCTCCCGATGCCCCAGTTGCCGATGCTACGATCCCCAACATCACCAC
GTCCCAGAATGCGAAATAGAGCAGCAACCGTTTTGCGGAAGCTGGCTTGG
AGACGACCGAAAGTGATGCAAGCATTGTGATGATACTGTATAGGCAAGCA
ACCGATAGTGCCGCGACAAAATATATGAAAGCCGGGGAATCGGTAAACTT
GGCTTTAACGCTGACTCTAATAGGAATCCCAGCTGGGCTTACGAGCTCAG
TTTGCTTGGCGGTAGCCATGACGATTACAGAAACGAGTGTTGCTGAAAAC
AGCAATACTCTAAGACCCACATCGATGCCAAAATAGTTTTCGCGCACCGC
CCTTTGATCTTCATATTTCGCTGGAGCTTCAGACGCCATGGTATGTGTTC
CTCGTG
back to top