CB293991

Overview
NameCB293991
Unique NameCB293991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293991_ssr91 microsatellite CB293991_ssr91:91..100. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497F_RICCO (UPF0497 membrane protein 15 OS=Ricinus communis GN=RCOM_0770240 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = -3
Query:  310 LRVLLFSATLVSVIVMATAKQTELVSPAGI---PIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 714
            LR + F AT  + IVMA  ++T+    A I   PI+ +V AKF  +PAF++FV A  +  +++++ M+A  + V K        +  A  D++                 +G  GNSH++W KIC+ +  +C H G+A
Sbjct:   30 LRFVAFLATAAATIVMAANRETKTFVVATIGSTPIKATVTAKFQHTPAFVFFVIANGMGSIHNLV-MIAGDTFVRKFDYKGLRWVTVAILDMLTAALISGGVNAAVFMAELGKNGNSHAKWNKICDRFGSFCDHGGAA 166          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4977_ORYSJ (UPF0497 membrane protein Os12g0610800 OS=Oryza sativa subsp. japonica GN=Os12g0610800 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.810e-11
Identity = 43/149 (28.86%), Postives = 74/149 (49.66%), Query Frame = -3
Query:  310 VRENYFGIDVGLRVLLFSATLVSVIVMATAKQ--TELVSPAGI-PIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 747
            V++    +   +R  +F AT V+ ++M   KQ  T +V+  G  P+  +  AKF D+PAF++FV A ++A  Y+++ ++    +  +  S    LL     D+V+L               +G  GN H+RW  IC+ +  +C H G A
Sbjct:   21 VKDKLITLQPVVRACVFLATAVAAVIMGLNKQSYTTVVAIVGTRPVTQTFTAKFKDTPAFVFFVIANAIASGYNLMVLVTRRILQRRAQSLSVHLL-----DMVILTLLATGSATAASMAQLGKNGNLHARWNPICDKFGSFCNHGGIA 164          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4974_ORYSJ (UPF0497 membrane protein Os06g0231050 OS=Oryza sativa subsp. japonica GN=Os06g0231050 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.670e-11
Identity = 52/169 (30.77%), Postives = 76/169 (44.97%), Query Frame = -3
Query:  304 HTMASEAPAKYEDQRAVRENYFGIDVGLRVLLFSATLVSVIVMATAKQTELVSPAGIPIR---VSVKAKFTDSPAFIYFVAALSVACLYSIITM-LASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHI-GSATG 795
            H   S+AP      R V +    +DV LR +    TL S I M T  QT       +P     +  KA+++D P   +FV A S+   Y I+++ L+ + V+   A   RL+L F  +D  ML              Y+  KGN+ + W  IC  +D +C  I GS  G
Sbjct:    7 HGETSKAPLS----RGVSKGVSILDVILRFVAIIGTLASAIAMGTTNQT-------LPFFTQFIRFKAQYSDLPTLTFFVVANSIVSAYLILSLPLSIVHVIRSRAKYSRLILIF--FDAAMLALVTAGASAAAAIVYLAHKGNARANWLAICQQFDSFCERISGSLIG 162          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U497A_ORYSJ (UPF0497 membrane protein Os01g0363300 OS=Oryza sativa subsp. japonica GN=Os01g0363300 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = -3
Query:  301 VGLRVLLFSATLVSVIVMATAKQTELVSPAG-----IPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSATGV 720
            V LRV +   TL S +VMA  +Q+  V  A       P+RV V AK+T S AF+YFV A ++   +S     A+L+ V + ++   +++     D+V +             G +G +GN+H RW K+C+VY  +C    +A  V
Sbjct:   53 VVLRVFVLLGTLASAVVMAADRQSTTVQIAAGEELAPPLRVPVTAKWTYSSAFVYFVVANAMVFAFSA----AALAAVRRRSAVVPVMV----GDLVAMALLFSAVGAAAQFGLLGERGNAHVRWAKVCDVYGPFCERAMAAVVV 189          
BLAST of CB293991 vs. ExPASy Swiss-Prot
Match: U4979_VITVI (UPF0497 membrane protein 9 OS=Vitis vinifera GN=GSVIVT00018576001 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 43/135 (31.85%), Postives = 66/135 (48.89%), Query Frame = -3
Query:  310 LRVLLFSATLVSVIVMATAKQTELVSPAGIPIRVSVKAKFTDSPAFIYFVAALSVACLYSIITMLASLSVVSKPASAKRLLLYFAFWDVVMLXXXXXXXXXXXXXGYIGLKGNSHSRWTKICNVYDKYCRHIGSA 714
            LR+L F ATL + IVMAT+ +          + +S++AK++ +PAF YFV A ++   YS++ +         P+      L  A  DVV+               Y+G KGNS++ W  IC+    YC H+  A
Sbjct:   13 LRLLAFGATLSAAIVMATSHERTTY------LSLSIEAKYSHTPAFKYFVIANAIGSAYSLLLLFL-------PSHGSLWPLVIAS-DVVITMFLTSSISAALSIAYVGKKGNSYAGWLPICDQVPNYCNHVTGA 133          
The following BLAST results are available for this feature:
BLAST of CB293991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
U497F_RICCO2.152e-1131.16UPF0497 membrane protein 15 OS=Ricinus communis GN... [more]
U4977_ORYSJ2.810e-1128.86UPF0497 membrane protein Os12g0610800 OS=Oryza sat... [more]
U4974_ORYSJ3.670e-1130.77UPF0497 membrane protein Os06g0231050 OS=Oryza sat... [more]
U497A_ORYSJ4.794e-1132.41UPF0497 membrane protein Os01g0363300 OS=Oryza sat... [more]
U4979_VITVI8.177e-1131.85UPF0497 membrane protein 9 OS=Vitis vinifera GN=GS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05ah12_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05ah12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293991 ID=CB293991; Name=CB293991; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTTTTTTCGTCAAAGCACATCTAATATTAATGGCCCTTTT
GGATCATACTACCTACGTACGTACCATGTATATATCCAAGCTCTCTCTCT
CAGGCATACAATTCATCTACACGTCTGATGATTGAAAATTCGAAAATAAA
TAAAACACTAGAGTACACAATACAGACAATTAACTGTAGAAACAAAGATA
CATAATCTAAATAATGATGTGATCAATCACGAATGCGCAAGTAAAGGGAG
TAAGAGGAGTGCATGGAGAGTAGCACGAGAAGAACAGCGGCGAGGAGTGA
GACCCCGGTGGCGCTGCCTATGTGTCTGCAGTACTTGTCGTAAACGTTGC
ATATCTTTGTCCATCTCGAGTGGCTGTTGCCCTTTAATCCGATATACCCC
ACCCCTCCCGATGCCCCAGTTGCCGATGCTACGATCCCCAACATCACCAC
GTCCCAGAATGCGAAATAGAGCAGCAACCGTTTTGCGGAAGCTGGCTTGG
AGACGACCGAAAGTGATGCAAGCATTGTGATGATACTGTATAGGCAAGCA
ACCGATAGTGCCGCGACAAAATATATGAAAGCCGGGGAATCGGTAAACTT
GGCTTTAACGCTGACTCTAATAGGAATCCCAGCTGGGCTTACGAGCTCAG
TTTGCTTGGCGGTAGCCATGACGATTACAGAAACGAGTGTTGCTGAAAAC
AGCAATACTCTAAGACCCACATCGATGCCAAAATAGTTTTCGCGCACCGC
CCTTTGATCTTCATATTTCGCTGGAGCTTCAGACGCCATGGTATGTGTTC
CTCGTG
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