CB293995

Overview
NameCB293995
Unique NameCB293995
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2B7_CHICK (Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y IY++KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.611e-36
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y IY++KV+KQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYAIYVYKVMKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2B_SIPNU (Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YN++ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNRRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2B1N_BOVIN (Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y +Y++KVLKQVHPD GISSKAMG MNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGNMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2B1K_MACFA (Histone H2B type 1-K OS=Macaca fascicularis GN=HIST1H2BK PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 73/90 (81.11%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y +Y++KVLK+VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKRVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2B_ASTPE (Histone H2B OS=Asterina pectinifera PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y IYI+KV+KQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   32 ESYGIYIYKVMKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2BFS_HUMAN (Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRL  YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLPHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2B1A_MOUSE (Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 3.589e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2B_RHASC (Histone H2B OS=Rhacophorus schlegelii GN=histh2b PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.687e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y IY++KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CB293995 vs. ExPASy Swiss-Prot
Match: H2B_ACRFO (Histone H2B OS=Acropora formosa PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.687e-36
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 2 
Query:  260 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 529
            E+Y IYI+KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRL+ YNKK TI+SREIQTA+RL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   35 ESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRLLLPGELAKHAVSEGTKAVTKYTSS 124
The following BLAST results are available for this feature:
BLAST of CB293995 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B7_CHICK1.611e-3683.33Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=... [more]
H2B12_XENLA1.611e-3682.22Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2[more]
H2B_SIPNU2.104e-3683.33Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2[more]
H2B1N_BOVIN2.748e-3682.22Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE... [more]
H2B1K_MACFA2.748e-3681.11Histone H2B type 1-K OS=Macaca fascicularis GN=HIS... [more]
H2B_ASTPE3.589e-3682.22Histone H2B OS=Asterina pectinifera PE=1 SV=2[more]
H2BFS_HUMAN3.589e-3681.11Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1... [more]
H2B1A_MOUSE3.589e-3683.33Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba ... [more]
H2B_RHASC4.687e-3682.22Histone H2B OS=Rhacophorus schlegelii GN=histh2b P... [more]
H2B_ACRFO4.687e-3682.22Histone H2B OS=Acropora formosa PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05cc07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05cc07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293995 ID=CB293995; Name=CB293995; organism=Citrus sinensis; type=EST; length=725bp
GCTGTTTGAGGTACTCTTATCGTTTCGAAGTAAAAGGAAAAGACCATATC
TACAAGCCTTGCCTTTCTCTCTCTCTACCAAACCGAAATTAATGGCACCA
AAGGCGGAGAAGAAGCCGGCTGAGAAGAAGCCAGCGGAGGAGAAGAAGAC
ATCGGTGGCCGAGAAGGCGCCGGCGGAGAAGAAGCCGAAGGCCGGCAAGA
AGCTTCCCAAAGAAGCCGCCTCTGGCGACAAGAAGAAGAAGCGCGCGAAG
AAGAGCATCGAGACGTACAAGATTTACATCTTCAAAGTCCTGAAGCAGGT
ACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTT
TCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCA
AGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGT
GAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTA
CCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCG
GTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCT
TTAATTTTACTACATGAAGTCGTTTTTATGTTTTGTGTTTTCAAATCTTT
GGAGGATTTTTAGGGTTTGTTTGGATGTACTAGACATTTGGACCTGATCC
AGGTGATGTGCATGTTCATTATGTT
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