CB293997

Overview
NameCB293997
Unique NameCB293997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.943e-28
Identity = 65/114 (57.02%), Postives = 79/114 (69.30%), Query Frame = -1
Query:  537 FHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTI-EAEGRQTGEPKSKVVISNSGEMA 875
            FHR+IP+FMIQ           G+SI+G  F DEN KL H  PG+LSMANAGPD+NGSQFFITTV T WLDG HVVFG+VLSG D+V+ I +AE     +P   V I  SG+++
Sbjct:   76 FHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKIIKSGQLS 189          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.943e-28
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = -1
Query:  546 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIE-AEGRQTGEPKSKVVISNSG 878
            +FHR+I  FMIQ           G+SI+G  FADEN KL+H+ PG+LSMANAG DTNGSQFFITTV+T WLDG+HVVFG+VL GMDVV  IE        +P   VVI++ G
Sbjct:   82 TFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIENTPTGSRSKPSVDVVIADCG 193          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.943e-28
Identity = 68/116 (58.62%), Postives = 78/116 (67.24%), Query Frame = -1
Query:  534 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEA-EGRQTGEPKSKVVISNSGEMAL 878
            SFHRII  FMIQ           G SI+G  F DEN  LKHTGPG+LSMANAGP+TNGSQFFI TV TSWLD +HVVFG+V+ GM +VRT+E+ E R    PK    I   GE+ L
Sbjct:  143 SFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDENFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETRAFDVPKKGCRIYACGELPL 258          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB_YARLI (Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia lipolytica GN=CPR2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.456e-28
Identity = 65/113 (57.52%), Postives = 78/113 (69.03%), Query Frame = -1
Query:  540 FHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIE-AEGRQTGEPKSKVVISNSGEM 875
            FHR+I +FMIQ           GESI+G  F DEN +LKHT P  LSMANAG DTNGSQFFITTV+TSWLDG+HVVFG+VL G D+V  IE A       PK  + I+++GE+
Sbjct:   81 FHRVIKNFMIQGGDFTRGDGTGGESIYGRKFPDENFQLKHTKPYKLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGQDIVDAIENAPTGARSNPKVDITIADAGEI 193          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 6.456e-28
Identity = 67/116 (57.76%), Postives = 80/116 (68.97%), Query Frame = -1
Query:  540 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTG---EPKSKVVISNSGEM 878
            +FHR+I  FMIQ           G+SI+G+ F DEN KLKH+  G+LSMANAG DTNGSQFFITTVITSWLDG+HVVFG+VL G DVV  I  E  +TG    P   + I+ SGE+
Sbjct:   83 TFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKI--ENTKTGPRDAPAEPIKIAKSGEL 196          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.456e-28
Identity = 65/111 (58.56%), Postives = 77/111 (69.37%), Query Frame = -1
Query:  546 FHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIE-AEGRQTGEPKSKVVISNSG 875
            FHR+I  FMIQ           G+SI+G+ F DEN KLKH GPG +SMANAG DTNGSQFFITTV T+WLDG+HVVFGKVL GMDVVR +E  +     +P   V I++ G
Sbjct:   84 FHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVVRKVENTKTDSRDKPLKDVTIADCG 194          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.456e-28
Identity = 67/114 (58.77%), Postives = 79/114 (69.30%), Query Frame = -1
Query:  540 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGE-PKSKVVISNSGEM 878
            +FHR+I SFMIQ           G+SI+GE FADEN KL+HT  G+LSMANAG DTNGSQFFITTV T WLDGRHVVFG+VL G +VV  IE   +  G+ P   V I  SG++
Sbjct:   84 TFHRVIKSFMIQGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVVEQIENVPKGPGDKPAETVKIVKSGQI 197          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.432e-28
Identity = 61/114 (53.51%), Postives = 76/114 (66.67%), Query Frame = -1
Query:  537 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGEPKSKVVISNSGEMA 878
            +FHR+IP FM Q           GESI+GE F DE    K   PGVLSMANAGP+TNGSQFFI TV T WLDG+HVVFG+V+ GMDVV+ IE  G + G     V +++ G+++
Sbjct:   59 TFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.438e-27
Identity = 63/114 (55.26%), Postives = 80/114 (70.18%), Query Frame = -1
Query:  540 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIE-AEGRQTGEPKSKVVISNSGEM 878
            +FHR+I +FMIQ           G+SI+G+ F DEN KLKHT  G+LSMANAG DTNGSQFFITTV+TSWLDG+HVVFG+VL G +++  IE ++      P   V I+ SGE+
Sbjct:   83 AFHRVIKNFMIQGGDFTKGDGTGGKSIYGDRFKDENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKIAKSGEL 196          
BLAST of CB293997 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.438e-27
Identity = 65/114 (57.02%), Postives = 78/114 (68.42%), Query Frame = -1
Query:  540 SFHRIIPSFMIQXXXXXXXXXXXGESIFGESFADENCKLKHTGPGVLSMANAGPDTNGSQFFITTVITSWLDGRHVVFGKVLSGMDVVRTIEAEGRQTGE-PKSKVVISNSGEM 878
            +FHR+I  FMIQ           G+SI+GE F DEN K++HT  G+LSMANAG DTNGSQFFITTV T WLDGRHVVFG+VL G +VV  IE   +  G+ P+  V I  SGE+
Sbjct:   68 TFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKIVKSGEL 181          
The following BLAST results are available for this feature:
BLAST of CB293997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
PPIB_SCHPO4.943e-2857.02Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB1_RHIOR4.943e-2858.04Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
CP20C_ARATH4.943e-2858.62Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPIB_YARLI6.456e-2857.52Peptidyl-prolyl cis-trans isomerase B OS=Yarrowia ... [more]
PPIB_NEUCR6.456e-2857.76Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_CHICK6.456e-2858.56Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIB_ASPFU6.456e-2858.77Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
CYPH_MAIZE8.432e-2853.51Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
PPIB_GIBZE1.438e-2755.26Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
PPIB_ASPOR1.438e-2757.02Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05da06_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05da06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293997 ID=CB293997; Name=CB293997; organism=Citrus sinensis; type=EST; length=878bp
TGATCATGAGATTACTCAGATATTAACTCTTCATATAAGCTCGATATCTC
ACTCCAAGAATCTCTCTCTCACTCGTCACTTATCTATCCTTTTGCTGACC
TTTGAGTAACCTTTTAGCCACACAGAACAAGCCCGGGGTGGTCTTCTTAG
CTAACAGATTTAACAGCCAAAAGGGCCCATGCCAGCTCAGCATGCCACCT
CATTCACGTTTTAACAGAATATAACTACTTCTTGGTTTCGCATGCCATGA
AACCAAGACCATTATATGAGTAGGAGTAACTGGTTCTTACAAGCAAATGC
AGGCAATTCCACTATAAACAATGAAAAATAATGAAACGCAAACTATTCTA
GGAATAACGGAGCTATTACCAAGCTCGAATCTGTTAAAGACCATTGCAAA
TTGCAATAAGGAATTATAGTTGTTTTTCTACAGACCATATACCAACCCGA
ATGGATGTGGAACCAAACAGATAGCACAAATATAGGACAAGTTATCAATT
TCCATATAAAAATTTAATAAGGATGGTCTGTCACAAAGCCATTTCACCAC
TGTTAGATATAACAACTTTACTTTTGGGCTCCCCAGTCTGCCTTCCTTCC
GCTTCAATTGTGCGGACAACGTCCATCCCAGAGAGCACTTTGCCAAACAC
AACATGGCGGCCATCCAACCAGCTAGTTATGACAGTCGTAATGAAGAACT
GTGACCCATTGGTGTCTGGCCCAGCATTTGCCATCGACAGAACTCCTGGA
CCAGTGTGCTTCAGTTTACAGTTCTCATCAGCAAAACTTTCCCCAAATAT
TGACTCTCCACCACGCCCATCACCAAGAGTAAAATCACCGCCCTGGATCA
TAAAGCTTGGAATAATCCTGTGAAATGA
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