CB293999

Overview
NameCB293999
Unique NameCB293999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293999_ssr72 microsatellite CB293999_ssr72:72..89. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293999_ssr327 microsatellite CB293999_ssr327:327..338. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig338 contig Csv1_Contig338:9..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK26_ARATH (Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana GN=CRK26 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 50/139 (35.97%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  433 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFH-WENQTIEWAMRLRVALYIAEALDYCSSERR 846
            +F  + L+ AT++FS +  + E G  A   VYKG L DG      IAVK+ +K+A     +F +E   V KL+H+ L  L+GY  +G ERLLV E++P+ +L K +F   +   +EW +R ++   +A  L Y   + R
Sbjct:  331 KFDFSVLQDATSHFSLENKLGEGGFGA---VYKGVLSDGQK----IAVKRLSKNAQQGETEFKNEFLLVAKLQHRNLVKLLGYSIEGTERLLVYEFLPHTSLDKFIFDPIQGNELEWEIRYKIIGGVARGLLYLHQDSR 462          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK25_ARATH (Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 46/139 (33.09%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  433 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWE-NQTIEWAMRLRVALYIAEALDYCSSERR 846
            +F  + + AATN FS     ++ G      VYKG+L  G      +A+K+ ++ +    ++F +E   V KL+H+ LA L+GYC DG+E++LV E++PN +L   LF  E  + ++W  R ++   IA  + Y   + R
Sbjct:  334 QFQFSAIEAATNKFSES---NKLGHGGFGEVYKGQLITGET----VAIKRLSQGSTQGAEEFKNEVDVVAKLQHRNLAKLLGYCLDGEEKILVYEFVPNKSLDYFLFDNEKRRVLDWQRRYKIIEGIARGILYLHRDSR 465          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.924e-14
Identity = 45/137 (32.85%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSERR 846
            F+ ++L++AT +F      ++ GE     VYKG+L DG +    +AVK  +  +     QF  E   +  ++H+ L  L G C +G+ RLLV EY+PN +L + LF  +   ++W+ R  + L +A  L Y   E R
Sbjct:  681 FTYSELKSATQDFDPS---NKLGEGGFGPVYKGKLNDGRE----VAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKTLHLDWSTRYEICLGVARGLVYLHEEAR 810          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK11_ARATH (Cysteine-rich receptor-like protein kinase 11 OS=Arabidopsis thaliana GN=CRK11 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.924e-14
Identity = 46/138 (33.33%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT-IEWAMRLRVALYIAEALDYCSSERR 846
            +    + AATN FS+   + E G  A   VYKG+L +G D    +AVK+ +K +    ++F +EA  V KL+H+ L  L+G+C + +E++L+ E++ N +L   LF  E Q+ ++W  R ++   IA  + Y   + R
Sbjct:  338 YDFKTIEAATNKFSTSNKLGEGGFGA---VYKGKLSNGTD----VAVKRLSKKSGQGTREFRNEAVLVTKLQHRNLVRLLGFCLEREEQILIYEFVHNKSLDYFLFDPEKQSQLDWTRRYKIIGGIARGILYLHQDSR 468          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.125e-14
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQ--TIEWAMRLRVALYIAEALDYCSSERRP 849
            F+L DL  ATN F+   ++ E G     VVY+G+L +G +    +AVKK   +     K+F  E   +G +RHK L  L+GYC +G  R+LV EY+ +  L + L     Q   + W  R+++    A+AL Y      P
Sbjct:  171 FTLRDLELATNRFAPVNVLGEGGY---GVVYRGKLVNGTE----VAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNLTWEARMKIITGTAQALAYLHEAIEP 303          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.125e-14
Identity = 42/131 (32.06%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDY 828
            FS A+++AAT NF    ++   G      VY+G +  G      +A+K+    +     +F  E   + KLRH+ L +LIGYC +  E +LV +YM + T+ +HL+  +N ++ W  RL + +  A  L Y
Sbjct:  524 FSFAEIKAATKNFDESRVLGVGGF---GKVYRGEIDGGTTK---VAIKRGNPMSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTMREHLYKTQNPSLPWKQRLEICIGAARGLHY 648          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.125e-14
Identity = 47/132 (35.61%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT-IEWAMRLRVALYIAEALDY 828
            F L  + AAT+ FSS+  + + G      VYKG L +G +    +AVK+ TK +     +F +E   + +L+H+ L  L+G+C +GDE++LV E++PN +L   +F  E ++ + W MR R+   IA  L Y
Sbjct:  341 FDLGMVLAATDEFSSENTLGQGGF---GTVYKGTLLNGQE----VAVKRLTKGSGQGDIEFKNEVSLLTRLQHRNLVKLLGFCNEGDEQILVYEFVPNSSLDHFIFDDEKRSLLTWEMRYRIIEGIARGLLY 465          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: WAKLM_ARATH (Wall-associated receptor kinase-like 17 OS=Arabidopsis thaliana GN=WAKL17 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 8.742e-14
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWE--NQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            F+  +L  AT NFS + ++   G+     VYKG L DG    R +AVKK         ++F +E   + ++ H+ +  L+G C + +  +LV E++ N  L KH+   E  + T+ W MRLR+A+ IA AL Y  S+   P+YH
Sbjct:  432 FTSKELEKATENFSENRVLGHGGQ---GTVYKGMLVDG----RTVAVKKSKVIDEDKLQEFINEVVILSQINHRHVVKLLGCCLETEVPILVYEFIINGNLFKHIHEEEADDYTMIWGMRLRIAVDIAGALSYLHSAASSPIYH 568          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.742e-14
Identity = 48/143 (33.57%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFH-WENQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            FS  +L  AT+NF+ + ++ + G+     VYKG L DG    R +AVK+         ++F +E   + ++ H+ +  L+G C + +  +LV E++PN  L K L H  ++ T+ W +RLR+++ IA AL Y  S+   P+YH
Sbjct:  409 FSSKELEKATDNFNMNRVLGQGGQ---GTVYKGMLVDG----RIVAVKRSKVLDEDKVEEFINEVGVLSQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRLHHDSDDYTMTWDVRLRISVEIAGALAYLHSAASTPVYH 544          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.742e-14
Identity = 45/137 (32.85%), Postives = 73/137 (53.28%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGN------DNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDY 828
            F+  +L+ AT NF  D ++ E G      V+KG +   +       +   +AVK+     +   K++  E   +G+L H  L  L+GYC +G+ RLLV E+MP  +L  HLF    Q + WA+R++VA+  A+ L +
Sbjct:   74 FTFNELKNATKNFRQDNLLGEGGF---GCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRRGAQPLTWAIRMKVAVGAAKGLTF 207          
The following BLAST results are available for this feature:
BLAST of CB293999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
CRK26_ARATH3.005e-1435.97Cysteine-rich receptor-like protein kinase 26 OS=A... [more]
CRK25_ARATH3.005e-1433.09Cysteine-rich receptor-like protein kinase 25 OS=A... [more]
Y5614_ARATH3.924e-1432.85Probable LRR receptor-like serine/threonine-protei... [more]
CRK11_ARATH3.924e-1433.33Cysteine-rich receptor-like protein kinase 11 OS=A... [more]
Y2296_ARATH5.125e-1434.29Probable receptor-like protein kinase At2g42960 OS... [more]
FERON_ARATH5.125e-1432.06Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]
CRK39_ARATH5.125e-1435.61Putative cysteine-rich receptor-like protein kinas... [more]
WAKLM_ARATH8.742e-1434.72Wall-associated receptor kinase-like 17 OS=Arabido... [more]
WAKLI_ARATH8.742e-1433.57Wall-associated receptor kinase-like 22 OS=Arabido... [more]
APK2A_ARATH8.742e-1432.85Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293999 ID=CB293999; Name=CB293999; organism=Citrus sinensis; type=EST; length=859bp
GCCCATTGAAAAAACCAAAAAAAAAAAAATGAAAAGAAAAAGAACCCTAG
TGCATATCTCCACTGATTAAATCTCTCTCTCTCTCTCTCTTTCACACTCA
CCCACACGAGCGCTTTCACTTGGACACAAACAAAAACTCTCTCTCGATAA
GAGAAAATAAAAAATTAAAAAGACGAAAACAAAACCAAACAGCTAATATT
ATTAGCTTCAGCTGCTGAGCTGGGGGGTTTGGTTGGTTCATTTCTTCTGA
GTCAACTCGGCCGAGTTATGGGCTGTTGCGAATCAACCTTCTTAAAAGGA
CACCTCTCGGTTGATACCAAAAATCGCCACCACCACCAACAGAATCACCG
CAATCATCCGACTCAGCCGTCTAATGGTACTGAGGGCTCAGGCGGACTCG
CTGCCGGCTCAGATGGCGCGCCGGCTTTCGCCGAGTTCTCCTTAGCCGAC
CTCAGAGCCGCTACGAATAACTTCAGTTCTGATTTTATCGTATCCGAGAG
CGGCGAAAAGGCTCCCAATGTCGTCTATAAAGGCCGCCTTCAAGACGGAA
ATGATAACCGCCGTTGGATCGCCGTTAAAAAATTCACCAAACATGCCTGG
CCCGATCCCAAACAGTTTGCTGATGAGGCTTGGGGTGTTGGGAAGCTGAG
GCATAAGAGGCTGGCGAATTTGATTGGCTATTGTTGTGATGGTGATGAGA
GATTGCTGGTGGCTGAGTACATGCCAAATGATACTCTTGCTAAACATTTA
TTTCACTGGGAGAATCAAACCATTGAGTGGGCTATGCGTCTAAGAGTTGC
TCTGTATATTGCTGAAGCTTTAGATTATTGCAGTAGTGAAAGACGTCCAT
TATACCATG
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