CB293999

Overview
NameCB293999
Unique NameCB293999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293999_ssr72 microsatellite CB293999_ssr72:72..89. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293999_ssr327 microsatellite CB293999_ssr327:327..338. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig338 contig Csv1_Contig338:9..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: ANX1_ARATH (Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.544e-13
Identity = 45/131 (34.35%), Postives = 67/131 (51.15%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDY 828
            FSL +++  T NF    ++   G      VYKG +    D    +AVKK   ++     +F  E   + +LRHK L +LIGYC +G E  LV +YM   TL +HL++ +   + W  RL +A+  A  L Y
Sbjct:  505 FSLPEIKHGTQNFDDSNVIGVGGF---GKVYKGVI----DGTTKVAVKKSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDEGGEMCLVYDYMAFGTLREHLYNTKKPQLTWKRRLEIAIGAARGLHY 628          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: WAKLL_ARATH (Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 45/143 (31.47%), Postives = 80/143 (55.94%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLF-HWENQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            FS  +L  AT+NF+ + ++ + G+     VYKG L DG    R +AVKK         ++F +E   + ++ H+ +  L+G C + +  +LV E++PN  L +HL   +++ T  W +R+R+A+ I+ A  Y  ++   P+YH
Sbjct:  442 FSSRELEKATDNFNDNRVIGQGGQ---GTVYKGMLVDG----RSVAVKKSNVVDEDKLQEFINEVIILSQINHRHVVKLLGCCLETEVPILVYEFIPNGNLFQHLHEEFDDYTALWGVRMRIAVDISGAFSYLHTAACSPIYH 577          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLF-HWENQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            FS  +L  AT+NF+ + ++ + G+     VYKG L DG    R +AVK+         ++F +E   + ++ H+ +  L+G C + +  +LV E++PN  L K L    ++ T+ W +RL +A+ IA AL Y  S+   P+YH
Sbjct:  404 FSSHELEKATDNFNKNRVLGQGGQ---GTVYKGMLVDG----RIVAVKRSKAVDEDRVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDYTMTWEVRLHIAIEIAGALSYLHSAASFPIYH 539          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK41_ARATH (Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 45/133 (33.83%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  451 LRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTI-EWAMRLRVALYIAEALDYCSSERR 846
            +R ATN+FS D   ++ GE     VYKG L  G +    IAVK+ +  +     +F +E   V KL+H+ L  L+G+C  G+ER+L+ E+  N +L  ++F    + I +W  R R+   +A  L Y   + R
Sbjct:  337 IRLATNDFSRD---NQLGEGGFGAVYKGVLDYGEE----IAVKRLSMKSGQGDNEFINEVSLVAKLQHRNLVRLLGFCLQGEERILIYEFFKNTSLDHYIFDSNRRMILDWETRYRIISGVARGLLYLHEDSR 462          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK15_ARATH (Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.322e-13
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 1
Query:  451 LRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT-IEWAMRLRVALYIAEALDYCSSERR 846
            +RAATN FS +  + + G      VYKG   +G +    +AVK+ +K +     +F +E   V KL+H+ L  L+G+   G ER+LV EYMPN +L   LF    Q  ++W  R +V   IA  + Y   + R
Sbjct:  330 IRAATNKFSENNKIGQGGF---GEVYKGTFSNGTE----VAVKRLSKSSGQGDTEFKNEVVVVAKLQHRNLVRLLGFSIGGGERILVYEYMPNKSLDYFLFDPAKQNQLDWTRRYKVIGGIARGILYLHQDSR 455          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 48/141 (34.04%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  430 AEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQ--TIEWAMRLRVALYIAEALDYCSSERR 846
            A FSL  ++ ATNNF S    +  GE     VYKG+L DG      IAVK+ +  +    ++F +E   +  L H  L  L G C +G + LLV E++ N++LA+ LF  +     ++W  R ++ + +A  L Y   E R
Sbjct:  610 ASFSLRQIKIATNNFDS---ANRIGEGGFGPVYKGKLFDGTI----IAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESR 743          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK40_ARATH (Cysteine-rich receptor-like protein kinase 40 OS=Arabidopsis thaliana GN=CRK40 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 44/132 (33.33%), Postives = 74/132 (56.06%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT-IEWAMRLRVALYIAEALDY 828
            F L  +  AT++FSS+  + + G      VYKG   +G +    +AVK+ TK +     +F +E   + +L+HK L  L+G+C +GDE +LV E++PN +L   +F  + ++ + W +R R+   IA  L Y
Sbjct:  336 FDLGMIVMATDDFSSENTLGQGGF---GTVYKGTFPNGQE----VAVKRLTKGSGQGDMEFKNEVSLLTRLQHKNLVKLLGFCNEGDEEILVYEFVPNSSLDHFIFDEDKRSLLTWEVRFRIIEGIARGLLY 460          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK19_ARATH (Cysteine-rich receptor-like protein kinase 19 OS=Arabidopsis thaliana GN=CRK19 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.339e-13
Identity = 45/139 (32.37%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  433 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLF-HWENQTIEWAMRLRVALYIAEALDYCSSERR 846
            +F    + AATN F     +++ G+     VYKG L  G      +AVK+ +K +    K+F +E   V KL+H+ L  L+GYC +G+E++LV E++PN +L   LF       ++W  R ++   IA  + Y   + R
Sbjct:  313 QFDFKAIEAATNCFLP---INKLGQGGFGEVYKGTLSSGLQ----VAVKRLSKTSGQGEKEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSLDHFLFDSTMKMKLDWTRRYKIIGGIARGILYLHQDSR 444          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 42/130 (32.31%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  439 SLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDY 828
            S A+L++ TNNF    ++   G     +V++G L+D       +AVK+ +  +     +F  E   + K+RH+ L +L+GYC +  E +LV EYM    L  HL+   N  + W  RL V +  A  L Y
Sbjct:  478 SFAELQSGTNNFDRSLVIGVGGF---GMVFRGSLKDNTK----VAVKRGSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYGSTNPPLSWKQRLEVCIGAARGLHY 600          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 48/144 (33.33%), Postives = 76/144 (52.78%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDG------NDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWEN---QTIEWAMRLRVALYIAEALDYCSSE 840
            FS  +L+ AT NF SD +V E G      V++G L +       + +   IAVK+     +   +++  E   +G+L H  L  LIGYC + ++RLLV E+M   +L  HLF   N   + + W +R++VAL  A+ L +  S+
Sbjct:   49 FSFNELKLATRNFRSDSVVGEGGF---GCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLEDEQRLLVYEFMHKGSLENHLFANGNKDFKPLSWILRIKVALDAAKGLAFLHSD 189          
The following BLAST results are available for this feature:
BLAST of CB293999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ANX1_ARATH2.544e-1334.35Receptor-like protein kinase ANXUR1 OS=Arabidopsis... [more]
WAKLL_ARATH3.322e-1331.47Putative wall-associated receptor kinase-like 13 O... [more]
WAKLB_ARATH3.322e-1332.87Wall-associated receptor kinase-like 2 OS=Arabidop... [more]
CRK41_ARATH3.322e-1333.83Cysteine-rich receptor-like protein kinase 41 OS=A... [more]
CRK15_ARATH3.322e-1335.34Cysteine-rich receptor-like protein kinase 15 OS=A... [more]
Y1534_ARATH4.339e-1334.04Probable LRR receptor-like serine/threonine-protei... [more]
CRK40_ARATH4.339e-1333.33Cysteine-rich receptor-like protein kinase 40 OS=A... [more]
CRK19_ARATH4.339e-1332.37Cysteine-rich receptor-like protein kinase 19 OS=A... [more]
Y5241_ARATH5.667e-1332.31Probable receptor-like protein kinase At5g24010 OS... [more]
Y3545_ARATH5.667e-1333.33Probable receptor-like protein kinase At3g55450 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293999 ID=CB293999; Name=CB293999; organism=Citrus sinensis; type=EST; length=859bp
GCCCATTGAAAAAACCAAAAAAAAAAAAATGAAAAGAAAAAGAACCCTAG
TGCATATCTCCACTGATTAAATCTCTCTCTCTCTCTCTCTTTCACACTCA
CCCACACGAGCGCTTTCACTTGGACACAAACAAAAACTCTCTCTCGATAA
GAGAAAATAAAAAATTAAAAAGACGAAAACAAAACCAAACAGCTAATATT
ATTAGCTTCAGCTGCTGAGCTGGGGGGTTTGGTTGGTTCATTTCTTCTGA
GTCAACTCGGCCGAGTTATGGGCTGTTGCGAATCAACCTTCTTAAAAGGA
CACCTCTCGGTTGATACCAAAAATCGCCACCACCACCAACAGAATCACCG
CAATCATCCGACTCAGCCGTCTAATGGTACTGAGGGCTCAGGCGGACTCG
CTGCCGGCTCAGATGGCGCGCCGGCTTTCGCCGAGTTCTCCTTAGCCGAC
CTCAGAGCCGCTACGAATAACTTCAGTTCTGATTTTATCGTATCCGAGAG
CGGCGAAAAGGCTCCCAATGTCGTCTATAAAGGCCGCCTTCAAGACGGAA
ATGATAACCGCCGTTGGATCGCCGTTAAAAAATTCACCAAACATGCCTGG
CCCGATCCCAAACAGTTTGCTGATGAGGCTTGGGGTGTTGGGAAGCTGAG
GCATAAGAGGCTGGCGAATTTGATTGGCTATTGTTGTGATGGTGATGAGA
GATTGCTGGTGGCTGAGTACATGCCAAATGATACTCTTGCTAAACATTTA
TTTCACTGGGAGAATCAAACCATTGAGTGGGCTATGCGTCTAAGAGTTGC
TCTGTATATTGCTGAAGCTTTAGATTATTGCAGTAGTGAAAGACGTCCAT
TATACCATG
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