CB293999

Overview
NameCB293999
Unique NameCB293999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293999_ssr72 microsatellite CB293999_ssr72:72..89. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293999_ssr327 microsatellite CB293999_ssr327:327..338. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig338 contig Csv1_Contig338:9..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 52/141 (36.88%), Postives = 70/141 (49.65%), Query Frame = 1
Query:  433 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSERRPLY 855
            +  L DL  ATN F S  IV  S      V YK  L DG+     + VK+ +       KQF  E   +G++RH  L  L+G+C   DE LLV ++M N TL   L  W+   I+W  R+RVA+  A  L +     +PLY
Sbjct:  282 KIKLVDLIEATNGFDSGNIVVSSRS---GVSYKADLPDGST----LEVKRLSSCCELSEKQFRSEINKLGQIRHPNLVPLLGFCVVEDEILLVYKHMANGTLYSQLQQWD---IDWPTRVRVAVGAARGLAWLHHGCQPLY 412          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK10_ARATH (Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 43/126 (34.13%), Postives = 69/126 (54.76%), Query Frame = 1
Query:  475 SSDFIVSES-GEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFH-WENQTIEWAMRLRVALYIAEALDYCSSERR 846
            + DF+ S   G+     VYKG L DG +    +AVK+ +K +     +F +E   V KL+H+ L  L+G+C DG+ER+LV EY+PN +L   LF   +   ++W  R ++   +A  + Y   + R
Sbjct:  334 TDDFVESNKIGQGGFGEVYKGTLSDGTE----VAVKRLSKSSGQGEVEFKNEVVLVAKLQHRNLVRLLGFCLDGEERVLVYEYVPNKSLDYFLFDPAKKGQLDWTRRYKIIGGVARGILYLHQDSR 455          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.667e-13
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1
Query:  433 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQ-----FADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIE-------WAMRLRVALYIAEALDY 828
            EFS ++L +AT NFS +   ++ G  +  VVY+G+L DG +    +A+K+   +A     Q     F  E   + +L HK L  L+GYC + +E+LLV +YM N  L  HL H +N   +       W MR+++AL  A  ++Y
Sbjct:  483 EFSFSELASATGNFSLE---NKIGSGSFGVVYRGKLNDGRE----VAIKRGEVNAKMKKFQEKETAFDSEIAFLSRLHHKHLVRLVGYCEEREEKLLVYDYMKNGALYDHL-HDKNNVEKHSSLINSWKMRIKIALDAARGIEY 618          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 45/140 (32.14%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  442 LADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            L  ++ ATN+F  +  +   G      VYKG L DG      +AVK+    +     +F  E   + + RH+ L +LIGYC + +E +LV EYM N TL  HL+     ++ W  RL + +  A  L Y  + + +P+ H
Sbjct:  472 LVAVKEATNSFDENRAIGVGGF---GKVYKGELHDGTK----VAVKRANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSHLYGSGLLSLSWKQRLEICIGSARGLHYLHTGDAKPVIH 604          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 44/140 (31.43%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT---IEWAMRLRVALYIAEALDYCSSERR 846
            F+L  ++AAT+NF    +  + GE     VYKG L +G    + IAVK+ +  +    ++F +E   +  L+H  L  L G C +G++ +LV EY+ N+ L++ LF  +  +   ++W+ R ++ L IA+ L +   E R
Sbjct:  666 FTLRQIKAATDNFD---VTRKIGEGGFGSVYKGELSEG----KLIAVKQLSAKSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCLSRALFGKDESSRLKLDWSTRKKIFLGIAKGLTFLHEESR 798          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSE 840
            F+ ++L++AT +F      ++ GE     VYKG L DG    R +AVK  +  +     QF  E   +  + H+ L  L G C +G+ R+LV EY+PN +L + LF  +   ++W+ R  + L +A  L Y   E
Sbjct:  682 FTYSELKSATQDFDPS---NKLGEGGFGPVYKGNLNDG----RVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLHLDWSTRYEICLGVARGLVYLHEE 809          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 62/222 (27.93%), Postives = 96/222 (43.24%), Query Frame = 1
Query:  205 ASAAELGGLVGSFLLSQLGRV-MGCCESTFLKGHLSVD--TKXXXXXXXXXXXXPTQPSNGTEXXXXXXXXXXXXXXFAEFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            +S + LG +VGS + S L  V +G C   + K     D  +K             ++ SNGT                     A ++ ATNNF     +   G      VYKG L DG      +AVK+    +     +F  E   + + RH+ L +LIGYC + +E +L+ EYM N T+  HL+     ++ W  RL + +  A  L Y  + + +P+ H
Sbjct:  399 SSKSNLGLIVGSAIGSLLAVVFLGSCFVLYKKRKRGQDGHSKTWMPFSINGTSMGSKYSNGTTLTSITTNANY------RIPFAAVKDATNNFDESRNIGVGGF---GKVYKGELNDGTK----VAVKRGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSHLYGSGLPSLTWKQRLEICIGAARGLHYLHTGDSKPVIH 607          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: WAKLD_ARATH (Wall-associated receptor kinase-like 4 OS=Arabidopsis thaliana GN=WAKL4 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.666e-13
Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHL-FHWENQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            FS  +L  AT+NF+++ ++ + G+     VYKG L DG    R +AVK+         ++F +E   + ++ H+ +  L+G C + +  +LV E++PN  L K L    ++  + W +RL +A+ IA AL Y  S+   P+YH
Sbjct:  412 FSSNELEKATDNFNTNRVLGQGGQ---GTVYKGMLVDG----RIVAVKRSKAMDEDKVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLRDECDDYIMTWEVRLHIAIEIAGALSYLHSAASFPIYH 547          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: WAKLC_ARATH (Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.262e-12
Identity = 47/143 (32.87%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLF-HWENQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            FS  +L  AT+NFS D ++ + G+     VYK  L DG+     +AVK+         ++F +E   + ++ H+ +  L+G C + +  +LV EY+PN  L K L   +++  + W +RLR+A+ IA AL Y  S+   P++H
Sbjct:  416 FSSRELEKATDNFSIDRVLGQGGQ---GTVYKRMLVDGSI----VAVKRSKVVDEDKMEEFINEIVLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDEYDDYMMTWEVRLRIAVEIAGALSYMHSAASFPIFH 551          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.262e-12
Identity = 44/131 (33.59%), Postives = 63/131 (48.09%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDY 828
            F   ++  ATN F    ++   G      VYKG L+DG      +AVK+    +     +F  E   + KLRH+ L +LIGYC +  E +LV EYM N  L  HL+  +   + W  RL + +  A  L Y
Sbjct:  498 FMFQEIMDATNKFDESSLLGVGGFGR---VYKGTLEDGTK----VAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGADLPPLSWKQRLEICIGAARGLHY 621          
The following BLAST results are available for this feature:
BLAST of CB293999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
Y1699_ARATH5.667e-1336.88Probable LRR receptor-like serine/threonine-protei... [more]
CRK10_ARATH5.667e-1334.13Cysteine-rich receptor-like protein kinase 10 OS=A... [more]
ACCR3_ARATH5.667e-1334.72Putative serine/threonine-protein kinase-like prot... [more]
Y5597_ARATH7.401e-1332.14Probable receptor-like protein kinase At5g59700 OS... [more]
Y1765_ARATH7.401e-1331.43Probable LRR receptor-like serine/threonine-protei... [more]
Y1561_ARATH7.401e-1332.59Probable LRR receptor-like serine/threonine-protei... [more]
HERK_ARATH7.401e-1327.93Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
WAKLD_ARATH9.666e-1332.17Wall-associated receptor kinase-like 4 OS=Arabidop... [more]
WAKLC_ARATH1.262e-1232.87Wall-associated receptor kinase-like 3 OS=Arabidop... [more]
THE1_ARATH1.262e-1233.59Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293999 ID=CB293999; Name=CB293999; organism=Citrus sinensis; type=EST; length=859bp
GCCCATTGAAAAAACCAAAAAAAAAAAAATGAAAAGAAAAAGAACCCTAG
TGCATATCTCCACTGATTAAATCTCTCTCTCTCTCTCTCTTTCACACTCA
CCCACACGAGCGCTTTCACTTGGACACAAACAAAAACTCTCTCTCGATAA
GAGAAAATAAAAAATTAAAAAGACGAAAACAAAACCAAACAGCTAATATT
ATTAGCTTCAGCTGCTGAGCTGGGGGGTTTGGTTGGTTCATTTCTTCTGA
GTCAACTCGGCCGAGTTATGGGCTGTTGCGAATCAACCTTCTTAAAAGGA
CACCTCTCGGTTGATACCAAAAATCGCCACCACCACCAACAGAATCACCG
CAATCATCCGACTCAGCCGTCTAATGGTACTGAGGGCTCAGGCGGACTCG
CTGCCGGCTCAGATGGCGCGCCGGCTTTCGCCGAGTTCTCCTTAGCCGAC
CTCAGAGCCGCTACGAATAACTTCAGTTCTGATTTTATCGTATCCGAGAG
CGGCGAAAAGGCTCCCAATGTCGTCTATAAAGGCCGCCTTCAAGACGGAA
ATGATAACCGCCGTTGGATCGCCGTTAAAAAATTCACCAAACATGCCTGG
CCCGATCCCAAACAGTTTGCTGATGAGGCTTGGGGTGTTGGGAAGCTGAG
GCATAAGAGGCTGGCGAATTTGATTGGCTATTGTTGTGATGGTGATGAGA
GATTGCTGGTGGCTGAGTACATGCCAAATGATACTCTTGCTAAACATTTA
TTTCACTGGGAGAATCAAACCATTGAGTGGGCTATGCGTCTAAGAGTTGC
TCTGTATATTGCTGAAGCTTTAGATTATTGCAGTAGTGAAAGACGTCCAT
TATACCATG
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