CB293999

Overview
NameCB293999
Unique NameCB293999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB293999_ssr72 microsatellite CB293999_ssr72:72..89. BLAST: Citrus ESTs to Prunus persica proteins V1
CB293999_ssr327 microsatellite CB293999_ssr327:327..338. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig338 contig Csv1_Contig338:9..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.812e-12
Identity = 46/134 (34.33%), Postives = 71/134 (52.99%), Query Frame = 1
Query:  448 DLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQT---IEWAMRLRVALYIAEALDYCSSE 840
            DL AAT+ F  + IV   G      V++G L   + ++  IAVKK T ++    ++F  E   +G+LRHK L NL G+C   ++ LL+ +Y+PN +L   L+    Q+   + W  R ++A  IA  L Y   E
Sbjct:  353 DLYAATDGFKENRIVGTGGF---GTVFRGNLSSPSSDQ--IAVKKITPNSMQGVREFIAEIESLGRLRHKNLVNLQGWCKQKNDLLLIYDYIPNGSLDSLLYSRPRQSGVVLSWNARFKIAKGIASGLLYLHEE 481          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y5374_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g37450 OS=Arabidopsis thaliana GN=At5g37450 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 47/138 (34.06%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDYCSSERRP 849
            ++  +L +AT++FS    +S+ G      VYKG L  G      +AVK+  + +    K+F  E   + +L H+ L +L+GYC    E++LV EYMPN +L   L     Q +  A+RLR+AL  A  + Y  +E  P
Sbjct:  619 YNFTELDSATSSFSD---LSQIGRGGYGKVYKGHLPGG----LVVAVKRAEQGSLQGQKEFFTEIELLSRLHHRNLVSLLGYCDQKGEQMLVYEYMPNGSLQDALSARFRQPLSLALRLRIALGSARGILYLHTEADP 749          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 43/131 (32.82%), Postives = 63/131 (48.09%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALYIAEALDY 828
            FSL++L+  T NF +  I+   G      VY G + DG      +A+K+    +     +F  E   + KLRH+ L +LIGYC +  E +LV EYM N     HL+      + W  RL + +  A  L Y
Sbjct:  513 FSLSELQEVTKNFDASEIIGVGGF---GNVYIGTIDDGTQ----VAIKRGNPQSEQGITEFHTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEYMSNGPFRDHLYGKNLSPLTWKQRLEICIGAARGLHY 636          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 43/140 (30.71%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAK--HLFHWENQTIEWAMRLRVALYIAEALDYCSSERRP 849
            ++L +L AATN    + ++ E G     +VY+G L DG      +AVK    +     K+F  E   +G++RHK L  L+GYC +G  R+LV +++ N  L +  H    +   + W +R+ + L +A+ L Y      P
Sbjct:  142 YTLRELEAATNGLCEENVIGEGGY---GIVYRGILTDGTK----VAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLTWDIRMNIILGMAKGLAYLHEGLEP 274          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: WAKLG_ARATH (Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 46/143 (32.17%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFH-WENQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            FS  DL  AT+ F++  I+ + G+     VYKG L+DG      +AVKK       + ++F +E   + ++ H+ +  ++G C + +  +LV E++PN  L  HL +  E+  + W +RL +A  +A+AL Y  S+   P+YH
Sbjct:  378 FSSNDLENATDRFNASRILGQGGQ---GTVYKGMLEDG----MIVAVKKSKALKEENLEEFINEIILLSQINHRNVVKILGCCLETEVPILVYEFIPNRNLFDHLHNPSEDFPMSWEVRLCIACEVADALSYLHSAVSIPIYH 513          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: WAKLE_ARATH (Wall-associated receptor kinase-like 5 OS=Arabidopsis thaliana GN=WAKL5 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 48/143 (33.57%), Postives = 79/143 (55.24%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLF-HWENQTIEWAMRLRVALYIAEALDYC-SSERRPLYH 858
            FS  +L+ AT+NFS   ++   G+ +   VYKG + DG    + IAVK+         ++F +E   + ++ H+ +  LIG C + +  +LV EY+PN  + K L    ++  + W +RLR+A+ IA AL Y  S+   P+YH
Sbjct:  420 FSSEELKKATDNFSVKRVL---GKGSQGTVYKGMMVDG----KIIAVKRSKVVDEDKLEKFINEIILLSQINHRNIVKLIGCCLETEVPILVYEYIPNGDMFKRLHDESDDYAMTWEVRLRIAIEIAGALTYMHSAASFPIYH 555          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 43/140 (30.71%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWEN--QTIEWAMRLRVALYIAEALDYCSSERRP 849
            F+  +L  AT NF SD  + E G      V+KG ++  +   + +A+K+  ++     ++F  E   +    H  L  LIG+C +GD+RLLV EYMP  +L  HL    +  + ++W  R+++A   A  L+Y      P
Sbjct:   91 FTFQELAEATGNFRSDCFLGEGGF---GKVFKGTIEKLD---QVVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDHLHVLPSGKKPLDWNTRMKIAAGAARGLEYLHDRMTP 224          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK38_ARATH (Cysteine-rich receptor-like protein kinase 38 OS=Arabidopsis thaliana GN=CRK38 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 43/132 (32.58%), Postives = 73/132 (55.30%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQ-TIEWAMRLRVALYIAEALDY 828
            F    +  AT++FS +  + + G  +   VYKG+L  G +    IAVK+ T+ +     +F +E   + +L+H+ L  L+G+C +GDE +LV E++PN +L   +F  E +  + W MR R+   +A  L Y
Sbjct:  327 FDFRMILTATDDFSFENKIGQGGFGS---VYKGKLPGGEE----IAVKRLTRGSGQGEIEFRNEVLLLTRLQHRNLVKLLGFCNEGDEEILVYEFVPNSSLDHFIFDEEKRLLLTWDMRARIIEGVARGLVY 451          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK27_ARATH (Cysteine-rich receptor-like protein kinase 27 OS=Arabidopsis thaliana GN=CRK27 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 45/132 (34.09%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  436 FSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFH-WENQTIEWAMRLRVALYIAEALDY 828
            F    +R AT++FS   + ++ GE    VVYKG L DG +    IAVK+ + H+     +F  E   + KL+HK L  L G+     ERLLV E++PN +L + LF   + + ++W  R  + + ++  L Y
Sbjct:  321 FDFETIRVATDDFS---LTNKIGEGGFGVVYKGHLPDGLE----IAVKRLSIHSGQGNAEFKTEVLLMTKLQHKNLVKLFGFSIKESERLLVYEFIPNTSLDRFLFDPIKQKQLDWEKRYNIIVGVSRGLLY 445          
BLAST of CB293999 vs. ExPASy Swiss-Prot
Match: CRK20_ARATH (Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 44/139 (31.65%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  433 EFSLADLRAATNNFSSDFIVSESGEKAPNVVYKGRLQDGNDNRRWIAVKKFTKHAWPDPKQFADEAWGVGKLRHKRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQ-TIEWAMRLRVALYIAEALDYCSSERR 846
            +F    + AAT+ F     +++ G+     VYKG    G      +AVK+ +K++    K+F +E   V KL+H+ L  L+GYC +G+E++LV E++PN +L   LF    Q  ++W+ R ++   IA  + Y   + R
Sbjct:  331 QFDFKAIVAATDIFLP---INKLGQGGFGEVYKGTFPSGVQ----VAVKRLSKNSGQGEKEFENEVVVVAKLQHRNLVKLLGYCLEGEEKILVYEFVPNKSLDYFLFDPTMQGQLDWSRRYKIIGGIARGILYLHQDSR 462          
The following BLAST results are available for this feature:
BLAST of CB293999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
LRKA2_ARATH2.812e-1234.33Lectin-domain containing receptor kinase A4.2 OS=A... [more]
Y5374_ARATH3.673e-1234.06Probable LRR receptor-like serine/threonine-protei... [more]
Y2214_ARATH3.673e-1232.82Probable receptor-like protein kinase At2g21480 OS... [more]
Y1154_ARATH3.673e-1230.71Probable serine/threonine-protein kinase At1g01540... [more]
WAKLG_ARATH3.673e-1232.17Wall-associated receptor kinase-like 8 OS=Arabidop... [more]
WAKLE_ARATH3.673e-1233.57Wall-associated receptor kinase-like 5 OS=Arabidop... [more]
RLCK7_ARATH3.673e-1230.71Probable serine/threonine-protein kinase RLCKVII O... [more]
CRK38_ARATH3.673e-1232.58Cysteine-rich receptor-like protein kinase 38 OS=A... [more]
CRK27_ARATH3.673e-1234.09Cysteine-rich receptor-like protein kinase 27 OS=A... [more]
CRK20_ARATH3.673e-1231.65Putative cysteine-rich receptor-like protein kinas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB293999 ID=CB293999; Name=CB293999; organism=Citrus sinensis; type=EST; length=859bp
GCCCATTGAAAAAACCAAAAAAAAAAAAATGAAAAGAAAAAGAACCCTAG
TGCATATCTCCACTGATTAAATCTCTCTCTCTCTCTCTCTTTCACACTCA
CCCACACGAGCGCTTTCACTTGGACACAAACAAAAACTCTCTCTCGATAA
GAGAAAATAAAAAATTAAAAAGACGAAAACAAAACCAAACAGCTAATATT
ATTAGCTTCAGCTGCTGAGCTGGGGGGTTTGGTTGGTTCATTTCTTCTGA
GTCAACTCGGCCGAGTTATGGGCTGTTGCGAATCAACCTTCTTAAAAGGA
CACCTCTCGGTTGATACCAAAAATCGCCACCACCACCAACAGAATCACCG
CAATCATCCGACTCAGCCGTCTAATGGTACTGAGGGCTCAGGCGGACTCG
CTGCCGGCTCAGATGGCGCGCCGGCTTTCGCCGAGTTCTCCTTAGCCGAC
CTCAGAGCCGCTACGAATAACTTCAGTTCTGATTTTATCGTATCCGAGAG
CGGCGAAAAGGCTCCCAATGTCGTCTATAAAGGCCGCCTTCAAGACGGAA
ATGATAACCGCCGTTGGATCGCCGTTAAAAAATTCACCAAACATGCCTGG
CCCGATCCCAAACAGTTTGCTGATGAGGCTTGGGGTGTTGGGAAGCTGAG
GCATAAGAGGCTGGCGAATTTGATTGGCTATTGTTGTGATGGTGATGAGA
GATTGCTGGTGGCTGAGTACATGCCAAATGATACTCTTGCTAAACATTTA
TTTCACTGGGAGAATCAAACCATTGAGTGGGCTATGCGTCTAAGAGTTGC
TCTGTATATTGCTGAAGCTTTAGATTATTGCAGTAGTGAAAGACGTCCAT
TATACCATG
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