CB294003

Overview
NameCB294003
Unique NameCB294003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294003_ssr85 microsatellite CB294003_ssr85:85..98. BLAST: Citrus ESTs to Prunus persica proteins V1
CB294003_ssr104 microsatellite CB294003_ssr104:104..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9805 contig Csv1_Contig9805:27..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: HXT8_YEAST (Hexose transporter HXT8 OS=Saccharomyces cerevisiae GN=HXT8 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12
Identity = 51/210 (24.29%), Postives = 93/210 (44.29%), Query Frame = 2
Query:  203 PQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAA------------LYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTN--YAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            P+K        S   +  +    + G+D G +SG               + K+   +S+ +  +++ I N+ S IG L   +  D  GR   ++                 +  Y + +G R +AGIG G   ++AP+  +E +P   RG L +  ++ +   I LGY +NYG       + WR+ LG+    ++++  G+  +PESPR+
Sbjct:   56 PEKPASAYATVSIMCLCMAFGGFMSGWDTGTISGFVNQTDFLRRFGNYSHSKNTYYLSNVRTGLIVSIFNVGSAIGCLFLSKLGDIYGRCMGLIIVIVVYMVGIVIQIASIDKWYQYFIG-RIIAGIGAGSISVLAPMLISETAPKHIRGTLLACWQLMVTFAIFLGYCTNYGTKTYSNSVQWRVPLGLCFAWAIIMIGGMTFVPESPRF 264          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: GHT4_SCHPO (High-affinity hexose transporter ght4 OS=Schizosaccharomyces pombe GN=ght4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 53/195 (27.18%), Postives = 87/195 (44.62%), Query Frame = 2
Query:  248 ILASMTSILLGYDIGVMSG-----------AALY--IKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXT-NYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +  SM   L G D G +SG           A  Y  I +    S  +  +L G +N   L G++ +   ++ IG++Y+I                   ++  +M G+   G+ +G   +++P Y +E++P   RG + S  ++F   G L+    N G  KL     WR   GI  +  + L VGVL +PESPR+
Sbjct:   11 VFISMAGWLGGADTGSISGILGMRDFQSRFADRYNPITNSYSYSAWRQALLTGTVNAGCLFGAMLSSPFTEAIGKKYSIAFFSGCYIIGQILLVTAVPSWVQIMVGKLFTGLTIGALSVLSPGYQSEVAPPQIRGAVVSTYQLFQTCGTLIAACINMGTHKLRKTASWRTSFGINILWGIFLMVGVLFLPESPRY 205          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: GHT1_SCHPO (High-affinity glucose transporter ght1 OS=Schizosaccharomyces pombe GN=ght1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 49/195 (25.13%), Postives = 87/195 (44.62%), Query Frame = 2
Query:  248 ILASMTSILLGYDIGVMSG-----------AALY--IKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXT-NYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +  SM   + G D G + G           A  Y  + D    S  +  ++ G++N+ S  G L +  T+D IG+R +I+                  ++  +M  +   G+G+G   ++AP Y +E++P   RG +    ++ +  GI +    N G  KL     WR+ +GI  +  ++  VGV  + ESPR+
Sbjct:   11 LFVSMAGWMFGADTGSIGGITNMRDFQSRFADRYNPVTDTYSYSSARQGLITGMVNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIGVIIQVTAVPSWVQIMVAKIWTGLGIGALSVLAPGYQSEVAPPHIRGTIVVTYQLCVTAGIFIAACINMGTHKLYKTAQWRVSIGINLLWGIITLVGVSFLSESPRY 205          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: YIR0_YEAST (Putative transporter-like protein YIL170W OS=Saccharomyces cerevisiae GN=YIL170W PE=5 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 42/147 (28.57%), Postives = 71/147 (48.30%), Query Frame = 2
Query:  356 ILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTN--YAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +++ I NI   IG +   +  D  GRR  ++                 N  Y + +G R ++GIGVG   +++P+  +E++P   RG L    ++    GI LGY +NYG         WR+ LG+    +  +  G++ +PESPR+
Sbjct:    3 LIVSIFNIGCAIGGIVLSKVGDIYGRRIGLITVTAIYVVGILIQITSINKWYQYFIG-RIISGIGVGGIAVLSPMLISEVAPKHIRGTLVQLYQLMGTMGIFLGYCTNYGTKNYHNATQWRVGLGLCFAWATFMVSGMMFVPESPRY 148          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: RGT2_YEAST (High-affinity glucose transporter RGT2 OS=Saccharomyces cerevisiae GN=RGT2 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 52/199 (26.13%), Postives = 96/199 (48.24%), Query Frame = 2
Query:  218 KRNLYASGAAILASMTSILLGYDIGVMSGAA--LYIKDDLK-----VSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTN-YAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            + N+ +    I  ++   L GYD G+++      Y+K  +       + ++I IL+  L++ +  G+L A   SD  GR+ TI+                +     L+ GR ++GIG+G    + P+Y AE +  + RG + S  +  I  G+L+    + G         +R+ +G+  + S +LAVG++ +PESPR+
Sbjct:   94 RSNVMSVLVGIFVAVGGFLFGYDTGLINSITDMPYVKTYIAPNHSYFTTSQIAILVSFLSLGTFFGALIAPYISDSYGRKPTIMFSTAVIFSIGNSLQVASGGLVLLIVGRVISGIGIGIISAVVPLYQAEAAQKNLRGAIISSYQWAITIGLLVSSAVSQGTHSKNGPSSYRIPIGLQYVWSSILAVGMIFLPESPRY 292          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: GHT5_SCHPO (High-affinity glucose transporter ght5 OS=Schizosaccharomyces pombe GN=ght5 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 46/195 (23.59%), Postives = 87/195 (44.62%), Query Frame = 2
Query:  248 ILASMTSILLGYDIGVMSG-----------AALY--IKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXT-NYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +  SM   + G D G + G           A  Y  + D    S  +  ++ G++N+ S  G   +    D IG+R +I+                  ++  +M  +   G+ +G   ++AP + +E++PA  RG + +  ++ + GGI +    N G  KL     WR+ +GI  +  ++  +G+  +PESPR+
Sbjct:   11 VFVSMAGWMFGADTGSIGGITNMRDFQSRFADRYNPVTDSYSYSSARQGLITGMVNVGSFFGCFLSSPLMDRIGKRTSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWTGLSIGALSVLAPGFQSEVAPADLRGTIVTTYQLAVTGGIFIAACINMGTHKLHKTAQWRVSMGINLLWGIITFIGISFLPESPRY 205          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: GHT6_SCHPO (High-affinity fructose transporter ght6 OS=Schizosaccharomyces pombe GN=ght6 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 52/197 (26.40%), Postives = 87/197 (44.16%), Query Frame = 2
Query:  248 ILASMTSILLGYDIGVMSG-----------AALY--IKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXT-NYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLH--LGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +  SM   + G D G + G           A  Y  + D    S  +  +L+G++N  + +G L +    D  G+R  I+                  ++  +M  +   G+G+G   +IAP Y +E SP   RG + +  ++FI  GI +    N G  K   H    WR+ +GI  +  +L+  G+L +PESPR+
Sbjct:   11 VFVSMAGWMFGADTGSIGGITNMRDFQSRYADRYDPVTDTYSYSSARQGLLVGMVNTGTTVGCLLSSPLGDRFGKRKCIMGWTLVYITGVIVQLTTIPSWVQMMVAKIWTGLGIGALSVIAPGYQSESSPPHIRGAIVTTYQLFITLGIFIAACINMGTHKYTTHPEAQWRVPIGINLLWGILMFFGMLFLPESPRY 207          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: SNF3_YEAST (High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae GN=SNF3 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 53/204 (25.98%), Postives = 93/204 (45.59%), Query Frame = 2
Query:  203 PQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAAL--YIKDDL-----KVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTN-YAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            PQK+        G  +  ++   L GYD G+++      Y+K  +       +  ++ IL+  L++ +  G+L A   SD  GR+ TI+                      L+ GR ++GIG+G    + P+Y AE +  S RG + S  +  I  G+L+    + G         +R+ +G+  + S  LA+G+  +PESPR+
Sbjct:   89 PQKQSMMMSICVG--VFVAVGGFLFGYDTGLINSITSMNYVKSHVAPNHDSFTAQQMSILVSFLSLGTFFGALTAPFISDSYGRKPTIIFSTIFIFSIGNSLQVGAGGITLLIVGRVISGIGIGAISAVVPLYQAEATHKSLRGAIISTYQWAITWGLLVSSAVSQGTHARNDASSYRIPIGLQYVWSSFLAIGMFFLPESPRY 290          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: GTR8_BOVIN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Bos taurus GN=SLC2A8 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 47/187 (25.13%), Postives = 83/187 (44.39%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWI----GRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            AA  A++  +  G+ +G  S A   ++     +    E           +G+ A G    W+    GR+ ++V                 N   L+GGR + G+  G A ++APVY +E++    RG L S  ++ +  GILL Y++ +        L WR +  +G +P   + + +  MPE+PR+
Sbjct:   29 AAFAAALGPLSFGFALGYSSPAIPSLRRAAPPAPHLDEDAASWFGAIVTLGAAAGGVLGGWLLDRAGRKLSLVLCALPFVAGFAVITAAQNLWMLLGGRLLTGLACGIASLVAPVYISEIAYPEVRGLLGSCVQLMVVTGILLAYLAGW-------VLEWRWLAVLGCVPPSFMLLLMCFMPETPRF 208          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: GTR8_HUMAN (Solute carrier family 2, facilitated glucose transporter member 8 OS=Homo sapiens GN=SLC2A8 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 45/187 (24.06%), Postives = 87/187 (46.52%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALYIKDDL----KVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            AA  A++  +  G+ +G  S A   ++       ++ D        ++ + +  G +  G   D  GR+ +++                 +   L+GGR + G+  G A ++APVY +E++  + RG L S  ++ +  GILL Y++ +        L WR +  +G +P  L+ + +  MPE+PR+
Sbjct:   29 AAFAAALGPLSFGFALGYSSPAIPSLQRAAPPAPRLDDAAASWFGAVVTLGAAAGGVLGGWLVDRAGRKLSLLLCSVPFVAGFAVITAAQDVWMLLGGRLLTGLACGVASLVAPVYISEIAYPAVRGLLGSCVQLMVVVGILLAYLAGW-------VLEWRWLAVLGCVPPSLMLLLMCFMPETPRF 208          
The following BLAST results are available for this feature:
BLAST of CB294003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
HXT8_YEAST2.459e-1224.29Hexose transporter HXT8 OS=Saccharomyces cerevisia... [more]
GHT4_SCHPO5.477e-1227.18High-affinity hexose transporter ght4 OS=Schizosac... [more]
GHT1_SCHPO5.477e-1225.13High-affinity glucose transporter ght1 OS=Schizosa... [more]
YIR0_YEAST7.154e-1228.57Putative transporter-like protein YIL170W OS=Sacch... [more]
RGT2_YEAST7.154e-1226.13High-affinity glucose transporter RGT2 OS=Saccharo... [more]
GHT5_SCHPO7.154e-1223.59High-affinity glucose transporter ght5 OS=Schizosa... [more]
GHT6_SCHPO9.343e-1226.40High-affinity fructose transporter ght6 OS=Schizos... [more]
SNF3_YEAST2.718e-1125.98High-affinity glucose transporter SNF3 OS=Saccharo... [more]
GTR8_BOVIN2.718e-1125.13Solute carrier family 2, facilitated glucose trans... [more]
GTR8_HUMAN4.637e-1124.06Solute carrier family 2, facilitated glucose trans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_05dg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294003 ID=CB294003; Name=CB294003; organism=Citrus sinensis; type=EST; length=792bp
GTCTTGTTTTTGTAGTAGTTTCATGGCAGCTTGAGTTTCTATCTCTTCTT
CCAAACCCTAGCTTACATAATTAAACACTCGCAGTCTCTCTCTCTCTCGC
TCTCTAGCTAGCTAGCTTAGCAACAACATGGCTGCAGGCTTGGGAACCGA
GAGCAACAACAATACTGACCCTCAAAACCAAAAAACTCTTGCGGATTTTG
ATCCCCAAAAGAAACCAAAAAGAAATCTGTATGCCTCCGGCGCTGCCATT
TTGGCTTCCATGACTTCAATCTTACTAGGTTATGACATTGGAGTAATGAG
TGGAGCTGCACTCTACATCAAAGACGACTTGAAAGTCAGTGACACAAAAA
TCGAGATCTTAATGGGAATCTTGAATATTTACTCACTCATCGGCTCACTG
GCTGCCGGCAGAACCTCCGACTGGATTGGCCGCCGGTACACTATCGTGTT
AGCCGGGGCCATCTTCTTCGCCGGAGCGCTGCTCATGGGGTTCGCCACAA
ACTACGCTTTCCTCATGGGGGGTCGCTTCGTCGCCGGTATCGGCGTCGGA
TACGCTCTCATGATCGCTCCCGTTTACACAGCTGAACTTTCTCCGGCTTC
TACTCGAGGCTTTCTCACCTCATTTCCTGAGGTTTTCATTAACGGCGGGA
TATTACTTGGCTACGTCTCGAACTACGGATTCTCCAAACTACCCCTCCAC
TTAGGCTGGCGCATGATGCTCGGAATCGGCGCCATTCCGTCGGTGCTTCT
CGCCGTCGGCGTGTTAGCCATGCCAGAATCTCCGCGCTGGCT
back to top