CB294003

Overview
NameCB294003
Unique NameCB294003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294003_ssr85 microsatellite CB294003_ssr85:85..98. BLAST: Citrus ESTs to Prunus persica proteins V1
CB294003_ssr104 microsatellite CB294003_ssr104:104..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9805 contig Csv1_Contig9805:27..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: HGT1_CANAL (High-affinity glucose transporter OS=Candida albicans GN=HGT1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.655e-17
Identity = 52/185 (28.11%), Postives = 92/185 (49.73%), Query Frame = 2
Query:  245 AILASMTSILLGYDIGVMS---GAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            A ++++  ++ G+DI  MS   GA  Y++            +   + + S  GS+A+   S+  GRR +++                 N A L+ GR ++GIGVG+   +APVY AEL+P   RG +    + F+  GI++ +  ++G   +     +R+  G+  +P + L +G   +PESPRW
Sbjct:   33 ASISTIAGMMFGFDISSMSAFIGAEHYMRYFNSPGSDIQGFITSSMALGSFFGSIASSFVSEPFGRRLSLLTCAFFWMVGAAIQSSVQNRAQLIIGRIISGIGVGFGSAVAPVYGAELAPRKIRGLIGGMFQFFVTLGIMIMFYLSFGLGHINGVASFRIAWGLQIVPGLCLFLGCFFIPESPRW 217          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: EDL18_ARATH (Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.655e-17
Identity = 53/183 (28.96%), Postives = 86/183 (46.99%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +  +A   S   G  +G  SGA + I  DL +S  +      +  + + IG+L +G+ +  +GRR T+                  +  +L  GR  +GIG+G    + PVY AE+SP   RG  T   ++  N G+ + Y S          L WR++  +GA+P  +  +G+  +PESPRW
Sbjct:   38 STFIAVCGSFSFGVSLGYTSGAEIGIMKDLDLSIAQFSAFASLSTLGAAIGALFSGKMAIILGRRKTMWVSDLLCIIGWFSIAFAKDVMWLNFGRISSGIGLGLISYVVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGN-------FLNWRILALLGALPCFIQVIGLFFVPESPRW 213          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: STP13_ARATH (Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.386e-17
Identity = 55/202 (27.23%), Postives = 94/202 (46.53%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAA------------LYIK---------DDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESP 784
            + I+A+   ++ GYD+GV  G              +Y K         +  K  +  +++    L +  L  +  A  T+  +GRR T++                 + A L+ GR + G GVG+A    P++ +E++P   RG L    ++ +  GIL   + NYG +K+    GWR+ LG+  IP++LL VG L + E+P
Sbjct:   26 SCIMAATGGLMFGYDVGVSGGVTSMPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLGRRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETP 227          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: ITR2_YEAST (Myo-inositol transporter 2 OS=Saccharomyces cerevisiae GN=ITR2 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.386e-17
Identity = 53/186 (28.49%), Postives = 94/186 (50.54%), Query Frame = 2
Query:  251 LASMTSILLGYDIGVMSGAALYIKDDLKVSDTKI------EILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +AS++  + GYD G +S A + I  DL   D K+      E++    ++ +LI S+ AG  +D  GRR  ++                  +  +  GR + G GVG   +I+P++ +E++P   RG LT    +++ GG L+ Y    G +   +  GWR+++G+  IP+VL       +P++PR+
Sbjct:  115 VASISGFMFGYDTGYISSALISINRDL---DNKVLTYGEKELITAATSLGALITSVGAGTAADVFGRRPCLMFSNLMFLIGAILQITAHKFWQMAAGRLIMGFGVGIGSLISPLFISEIAPKMIRGRLTVINSLWLTGGQLIAYGCGAGLNH--VKNGWRILVGLSLIPTVLQFSFFCFLPDTPRY 295          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: HXT5_YEAST (Probable glucose transporter HXT5 OS=Saccharomyces cerevisiae GN=HXT5 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.260e-16
Identity = 56/209 (26.79%), Postives = 99/209 (47.37%), Query Frame = 2
Query:  206 QKKPKRNL-YASGAAILASMTSILLGYDIGVMSG-----------AALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTN--YAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +KK K +L + S   ++ +    + G+D G +SG            +        +SD +  +++ I NI   IG +   +  D  GR+  ++                 +  Y + +G R ++G+GVG   ++AP+  +E+SP   RG L S  ++ I  GI LGY +N+G       + WR+ LG+    S+ + VG+  +PESPR+
Sbjct:   76 EKKSKSDLLFVSVCCLMVAFGGFVFGWDTGTISGFVRQTDFIRRFGSTRANGTTYLSDVRTGLMVSIFNIGCAIGGIVLSKLGDMYGRKIGLMTVVVIYSIGIIIQIASIDKWYQYFIG-RIISGLGVGGITVLAPMLISEVSPKQLRGTLVSCYQLMITFGIFLGYCTNFGTKNYSNSVQWRVPLGLCFAWSIFMIVGMTFVPESPRY 283          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: GTR10_HUMAN (Solute carrier family 2, facilitated glucose transporter member 10 OS=Homo sapiens GN=SLC2A10 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.807e-16
Identity = 56/177 (31.64%), Postives = 86/177 (48.59%), Query Frame = 2
Query:  245 AILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMP 775
            A ++ +  +  GY++ V+SGA L ++ D  +S  + E L+G L + +L+ SL  G   D  GR+  I+                 + A+L+ GR V G  +  + M   +Y +EL     RG L S  E  I  GILL Y  NY  +  P   GWR M G    P+VL ++ +L +P
Sbjct:   12 ASVSLLGGLTFGYELAVISGALLPLQLDFGLSCLEQEFLVGSLLLGALLASLVGGFLIDCYGRKQAILGSNLVLLAGSLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGILLSYALNYALAGTP--WGWRHMFGWATAPAVLQSLSLLFLP 186          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: STP5_ARATH (Sugar transport protein 5 OS=Arabidopsis thaliana GN=STP5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16
Identity = 58/201 (28.86%), Postives = 91/201 (45.27%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALYIKDDL---------KVSDTKIEI-----------LMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESP 784
            + I+A+   ++ GYDIG+ SG    +K  L         K S+ K  +               L +  L+ SL A R +   GRR T++                 N A L+ GR + G GVG+    APVY +E++P   RG        FI+ G++   + NYG        GWR+ LG+ A+P+ ++ VG L + ++P
Sbjct:   27 SCIVAASCGLIFGYDIGI-SGGVTTMKPFLEKFFPSVLKKASEAKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGRRTTMILGGFTFLFGALINGLAANIAMLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGAFNIGFSCFISMGVVAANLINYGTDS--HRNGWRISLGLAAVPAAIMTVGCLFISDTP 224          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.666e-16
Identity = 53/199 (26.63%), Postives = 94/199 (47.24%), Query Frame = 2
Query:  248 ILASMTSILLGYDIGVMSGA------------ALYIKDDLKVSDTK--------IEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESP 784
            ++A+M  ++ GYDIG+  G             ++Y K     S  +        + +    L + +LI SL A   +   GRR +++                 +   L+ GR + G G+G+A    P+Y +E++P   RG L    ++ I  GIL+  V NY F+K+    GWR+ LG   +P++++ +G L +P++P
Sbjct:   28 VVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGALNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTP 226          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16
Identity = 55/206 (26.70%), Postives = 96/206 (46.60%), Query Frame = 2
Query:  227 LYASGAAILASMTSILLGYDIGVMSGA------------ALYIKDDLKVSDTK--------IEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESP 784
            LY +   ++A+M  ++ GYDIG+  G             ++Y K     S  +        + +    L + +LI SL A   +   GR+ +++                     L+ GR + G G+G+A    P+Y +E++P   RG L    ++ I  GIL+  V NY F+K+    GWR+ LG   +P++++ VG L +P++P
Sbjct:   23 LYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTP 228          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: ERDL9_ARATH (Sugar transporter ERD6-like 9 OS=Arabidopsis thaliana GN=At3g05155 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.787e-16
Identity = 52/175 (29.71%), Postives = 81/175 (46.29%), Query Frame = 2
Query:  266 SILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            S   G  +G  +G    I +DL +S T+  +   +L    +IG+L +   +D  G + T+                  N  +L  GRF  GIGVG    + PVY AE++P + RG  T   ++  N G+   Y        L   + WR++  IG +P ++  VG+  +PESPRW
Sbjct:   38 SFSFGVALGHTAGTMASIMEDLDLSITQFSVFGSLLTFGGMIGALFSATIADSFGCKMTLWITEVFCISGWLAIALAKNIIWLDLGRFFVGIGVGLLSYVVPVYIAEITPKTVRGTFTFSNQLLQNCGVATAYY-------LGNFMSWRIIALIGILPCLIQLVGLFFVPESPRW 205          
The following BLAST results are available for this feature:
BLAST of CB294003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
HGT1_CANAL5.655e-1728.11High-affinity glucose transporter OS=Candida albic... [more]
EDL18_ARATH5.655e-1728.96Sugar transporter ERD6-like 18 OS=Arabidopsis thal... [more]
STP13_ARATH7.386e-1727.23Sugar transport protein 13 OS=Arabidopsis thaliana... [more]
ITR2_YEAST7.386e-1728.49Myo-inositol transporter 2 OS=Saccharomyces cerevi... [more]
HXT5_YEAST1.260e-1626.79Probable glucose transporter HXT5 OS=Saccharomyces... [more]
GTR10_HUMAN2.807e-1631.64Solute carrier family 2, facilitated glucose trans... [more]
STP5_ARATH3.666e-1628.86Sugar transport protein 5 OS=Arabidopsis thaliana ... [more]
STP1_ARATH3.666e-1626.63Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STC_RICCO4.787e-1626.70Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
ERDL9_ARATH4.787e-1629.71Sugar transporter ERD6-like 9 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294003 ID=CB294003; Name=CB294003; organism=Citrus sinensis; type=EST; length=792bp
GTCTTGTTTTTGTAGTAGTTTCATGGCAGCTTGAGTTTCTATCTCTTCTT
CCAAACCCTAGCTTACATAATTAAACACTCGCAGTCTCTCTCTCTCTCGC
TCTCTAGCTAGCTAGCTTAGCAACAACATGGCTGCAGGCTTGGGAACCGA
GAGCAACAACAATACTGACCCTCAAAACCAAAAAACTCTTGCGGATTTTG
ATCCCCAAAAGAAACCAAAAAGAAATCTGTATGCCTCCGGCGCTGCCATT
TTGGCTTCCATGACTTCAATCTTACTAGGTTATGACATTGGAGTAATGAG
TGGAGCTGCACTCTACATCAAAGACGACTTGAAAGTCAGTGACACAAAAA
TCGAGATCTTAATGGGAATCTTGAATATTTACTCACTCATCGGCTCACTG
GCTGCCGGCAGAACCTCCGACTGGATTGGCCGCCGGTACACTATCGTGTT
AGCCGGGGCCATCTTCTTCGCCGGAGCGCTGCTCATGGGGTTCGCCACAA
ACTACGCTTTCCTCATGGGGGGTCGCTTCGTCGCCGGTATCGGCGTCGGA
TACGCTCTCATGATCGCTCCCGTTTACACAGCTGAACTTTCTCCGGCTTC
TACTCGAGGCTTTCTCACCTCATTTCCTGAGGTTTTCATTAACGGCGGGA
TATTACTTGGCTACGTCTCGAACTACGGATTCTCCAAACTACCCCTCCAC
TTAGGCTGGCGCATGATGCTCGGAATCGGCGCCATTCCGTCGGTGCTTCT
CGCCGTCGGCGTGTTAGCCATGCCAGAATCTCCGCGCTGGCT
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