CB294003

Overview
NameCB294003
Unique NameCB294003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length792
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294003_ssr85 microsatellite CB294003_ssr85:85..98. BLAST: Citrus ESTs to Prunus persica proteins V1
CB294003_ssr104 microsatellite CB294003_ssr104:104..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9805 contig Csv1_Contig9805:27..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.252e-16
Identity = 48/197 (24.37%), Postives = 94/197 (47.72%), Query Frame = 2
Query:  251 LASMTSILLGYDIGVMSGAAL----------YIKDDLKVSDTK---------IEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESP 784
            + +   ++ GYD+G+  G             Y+   +K +            + +    L + +L+ SL A   +   GR++++                  N A L+ GR + G GVG+A    PVY +E++P + RG   +  +V I  GI++  + NY  +++  ++GWR+ LG+  +P+V++ +G L +P++P
Sbjct:   29 IGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGAFNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTP 225          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: ITR1_YEAST (Myo-inositol transporter 1 OS=Saccharomyces cerevisiae GN=ITR1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.252e-16
Identity = 52/186 (27.96%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  251 LASMTSILLGYDIGVMSGAALYIKDDLKVSDTKI------EILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +AS++  + GYD G +S A + I  DL   D K+      EI+    ++ +LI S+ AG  +D  GR+  ++                  +  +  GR + G GVG   +IAP++ +E++P   RG LT    +++ GG L+ Y    G +   ++ GWR+++G+  IP+ +    +  +P++PR+
Sbjct:   92 VASISGFMFGYDTGYISSALISIGTDL---DHKVLTYGEKEIVTAATSLGALITSIFAGTAADIFGRKRCLMGSNLMFVIGAILQVSAHTFWQMAVGRLIMGFGVGIGSLIAPLFISEIAPKMIRGRLTVINSLWLTGGQLVAYGCGAGLNY--VNNGWRILVGLSLIPTAVQFTCLCFLPDTPRY 272          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: ERD6_ARATH (Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 6.252e-16
Identity = 53/183 (28.96%), Postives = 86/183 (46.99%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +  +A   S   G  +G  SGA   I  DL +S  +  +   IL +  LIG++ +G+ +D +GR+ T++                 N  +L  GR + GIGVG    + PVY AE++P   RG      ++  N GI L ++       +   + WR++  +G +P V     +  +PESPRW
Sbjct:   61 STFVAVSGSFCTGCGVGFSSGAQAGITKDLSLSVAEYSMFGSILTLGGLIGAVFSGKVADVLGRKRTMLFCEFFCITGWLCVALAQNAMWLDCGRLLLGIGVGIFSYVIPVYIAEIAPKHVRGSFVFANQLMQNCGISLFFI-------IGNFIPWRLLTVVGLVPCVFHVFCLFFIPESPRW 236          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: GHT2_SCHPO (High-affinity glucose transporter ght2 OS=Schizosaccharomyces pombe GN=ght2 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 52/195 (26.67%), Postives = 89/195 (45.64%), Query Frame = 2
Query:  248 ILASMTSILLGYDIGVMSGAALY-------------IKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXT-NYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            I  SM   + G D G + G                 I D   +S  +  +L G++N+ SL G + +   +D  G+R +I+                  ++  +M  +   GIG+G   ++AP Y +E +P S RG +    ++F+ GGI +    N G  KL     WR+ +GI  +  ++  +G+L +PESPR+
Sbjct:   15 IFVSMAGWMFGADTGSIGGVTSMRDFRERYADRYDPITDQYSLSSARQGLLTGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPSWVQIMVAKIWTGIGIGALSVLAPGYQSETAPPSIRGTVVVTYQLFVTGGIFIAACINMGTHKLHKTAQWRVSIGINLLWGIITMIGILFLPESPRY 209          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: KHT2_KLULA (Hexose transporter 2 OS=Kluyveromyces lactis GN=KHT2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.067e-15
Identity = 60/231 (25.97%), Postives = 104/231 (45.02%), Query Frame = 2
Query:  140 LGTESNNNTDPQNQKTLADFDPQKKPKRNLYASGAAILASMTSILLGYDIGVMSGAALYIKDDLK------------VSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRY--TIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +G+  +   D  N    A   P+K     +  S   ++ +    + G+D G +SG      D ++            +S+ +  +++ I NI   IG +   +  D  GRR    IV                  Y + +G R ++G+GVG   +++P+  +E +P   RG L SF ++ I  GI LGY +NYG       + WR+ LG+    ++ +  G+L +PESPR+
Sbjct:   31 VGSRDDLKVDDDNHSVDAIELPKKPRSAYITVSILCLMVAFGGFVFGWDTGTISGFVNQT-DFIRRFGQEKADGSHYLSNVRTGLIVSIFNIGCAIGGIILSKLGDMYGRRIGLMIVVLIYVVGIIIQIASIDKWYQYFIG-RIISGLGVGGISVLSPMLISETAPKHIRGTLVSFYQLMITFGIFLGYCTNYGTKTYSNSVQWRVPLGLCFAWAIFMITGMLFVPESPRF 259          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: STP12_ARATH (Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 55/209 (26.32%), Postives = 95/209 (45.45%), Query Frame = 2
Query:  218 KRNLYASGAAILASMTSILLGYDIGVMSGA------------ALYIKDD--------LKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESP 784
            K  LY +   I+A+M  ++ GYDIG+  G             ++Y K           +     + +    L + +L  SL A   +   GR+ +++                T    L+ GR + G G+G+     P+Y +E++P   RG L    ++ I  GIL+  V N+ FSK  +  GWR+ LG   +P++++ VG L +P++P
Sbjct:   18 KLTLYVTVTCIVAAMGGLIFGYDIGISGGVTTMDSFQQKFFPSVYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGRKISMLLGGVLFCAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGALNIGFQLSITIGILVANVLNFFFSK--ISWGWRLSLGGAVVPALIITVGSLILPDTP 224          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 54/201 (26.87%), Postives = 93/201 (46.27%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALY--------------IKDDLKVSD------TKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESP 784
            + ++A+M  ++ GYDIGV  G                  +K+D ++S+        +      L +  L+ S  A   +   GR+ +I+   X    X        N   L+ GR + G+GVG+A    P+Y +E++P   RG + +  +  +  G L   + NYG  K+    GWR+ L + A+P+ +L  G L +PE+P
Sbjct:   25 SCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGAINNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETP 225          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: EDL10_ARATH (Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.819e-15
Identity = 55/183 (30.05%), Postives = 85/183 (46.45%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            +  +A  +S   G   G  SGA   I  +L +S  +       LN+   +G+L +G+ +  +GRR T+                  N  +L  GR   GIGVG    + PVY AE++P   RG  ++   +  N GI L Y     F  +   + WR++  IGA+P  +  +G+  +PESPRW
Sbjct:   24 STFVAVCSSFSYGCANGYTSGAETAIMKELDLSMAQFSAFGSFLNLGGAVGALFSGQLAVILGRRRTLWACDLFCIFGWLSIAFAKNVLWLDLGRISLGIGVGLTSYVVPVYIAEITPKHVRGAFSASTLLLQNSGISLIYF----FGTV---INWRVLAVIGALPCFIPVIGIYFIPESPRW 199          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: HGT1_KLULA (High-affinity glucose transporter OS=Kluyveromyces lactis GN=HGT1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 55/197 (27.92%), Postives = 93/197 (47.21%), Query Frame = 2
Query:  224 NLYASGAAILASMTSILLGYDIGVMS---GAALYIK-----DDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESPRW 790
            N+Y  G   +A ++ ++ G+DI  MS   G  +Y       D L        +  G     S +GSL +   SD  GR+ ++                  + A L+ GR ++G+G+G+    APVY +E+SP   RG ++   +  +  GI++ +   YG   +     +R+  G+  +P ++L VGV  +PESPRW
Sbjct:   27 NIYVIG--FIACISGLMFGFDIASMSSMIGTDVYKDYFSNPDSLTYGGITASMAGG-----SFLGSLISPNFSDAFGRKVSLHICAALWIIGAILQCAAQDQAMLIVGRVISGMGIGFGSSAAPVYCSEISPPKIRGTISGLFQFSVTVGIMVLFYIGYGCHFIDGAAAFRITWGLQMVPGLILMVGVFFIPESPRW 216          
BLAST of CB294003 vs. ExPASy Swiss-Prot
Match: GTR10_XENLA (Solute carrier family 2, facilitated glucose transporter member 10 OS=Xenopus laevis GN=slc2a10 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.103e-15
Identity = 50/181 (27.62%), Postives = 88/181 (48.62%), Query Frame = 2
Query:  242 AAILASMTSILLGYDIGVMSGAALYIKDDLKVSDTKIEILMGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXXTNYAFLMGGRFVAGIGVGYALMIAPVYTAELSPASTRGFLTSFPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLLAVGVLAMPESP 784
            AA  + +  ++ GY++G++SGA L +K   +++  + E L+  +   +L+ SL  G   D  GRR +I+                +++ +L+ GR   G  +  + M   +Y +E+     RG L S  E  I  GIL+ Y  NY  S   ++ GW+ M G+  IP+    + +L +P  P
Sbjct:   11 AATSSLLGGLIFGYELGIISGALLMLKTVFQLTCFEQEALVSAVLFGALLASLIGGFIIDRSGRRTSIMGSNLVVLAGSIILIATSSFWWLVVGRVTVGFAISISSMACCIYVSEIVRPHQRGTLVSLYETGITVGILISYAMNYFLS--AVNDGWKYMFGLAIIPAAFQFIVILFLPSKP 189          
The following BLAST results are available for this feature:
BLAST of CB294003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 130
Match NameE-valueIdentityDescription
STP4_ARATH6.252e-1624.37Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]
ITR1_YEAST6.252e-1627.96Myo-inositol transporter 1 OS=Saccharomyces cerevi... [more]
ERD6_ARATH6.252e-1628.96Sugar transporter ERD6 OS=Arabidopsis thaliana GN=... [more]
GHT2_SCHPO8.166e-1626.67High-affinity glucose transporter ght2 OS=Schizosa... [more]
KHT2_KLULA1.067e-1525.97Hexose transporter 2 OS=Kluyveromyces lactis GN=KH... [more]
STP12_ARATH1.393e-1526.32Sugar transport protein 12 OS=Arabidopsis thaliana... [more]
HEX6_RICCO1.819e-1526.87Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
EDL10_ARATH1.819e-1530.05Sugar transporter ERD6-like 10 OS=Arabidopsis thal... [more]
HGT1_KLULA2.376e-1527.92High-affinity glucose transporter OS=Kluyveromyces... [more]
GTR10_XENLA3.103e-1527.62Solute carrier family 2, facilitated glucose trans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_05dg04_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_05dg04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294003 ID=CB294003; Name=CB294003; organism=Citrus sinensis; type=EST; length=792bp
GTCTTGTTTTTGTAGTAGTTTCATGGCAGCTTGAGTTTCTATCTCTTCTT
CCAAACCCTAGCTTACATAATTAAACACTCGCAGTCTCTCTCTCTCTCGC
TCTCTAGCTAGCTAGCTTAGCAACAACATGGCTGCAGGCTTGGGAACCGA
GAGCAACAACAATACTGACCCTCAAAACCAAAAAACTCTTGCGGATTTTG
ATCCCCAAAAGAAACCAAAAAGAAATCTGTATGCCTCCGGCGCTGCCATT
TTGGCTTCCATGACTTCAATCTTACTAGGTTATGACATTGGAGTAATGAG
TGGAGCTGCACTCTACATCAAAGACGACTTGAAAGTCAGTGACACAAAAA
TCGAGATCTTAATGGGAATCTTGAATATTTACTCACTCATCGGCTCACTG
GCTGCCGGCAGAACCTCCGACTGGATTGGCCGCCGGTACACTATCGTGTT
AGCCGGGGCCATCTTCTTCGCCGGAGCGCTGCTCATGGGGTTCGCCACAA
ACTACGCTTTCCTCATGGGGGGTCGCTTCGTCGCCGGTATCGGCGTCGGA
TACGCTCTCATGATCGCTCCCGTTTACACAGCTGAACTTTCTCCGGCTTC
TACTCGAGGCTTTCTCACCTCATTTCCTGAGGTTTTCATTAACGGCGGGA
TATTACTTGGCTACGTCTCGAACTACGGATTCTCCAAACTACCCCTCCAC
TTAGGCTGGCGCATGATGCTCGGAATCGGCGCCATTCCGTCGGTGCTTCT
CGCCGTCGGCGTGTTAGCCATGCCAGAATCTCCGCGCTGGCT
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