CB294007

Overview
NameCB294007
Unique NameCB294007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 3.823e-47
Identity = 85/147 (57.82%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L  NP  G  AG ++E N FEW   I+GP DT +E G F AI+SFP +YP SPP ++FT +++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE+I+LS++SML+ PNDES ANV+A+K WRD R+ F K   + V++S
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKVAKQIVQKS 162          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.994e-47
Identity = 85/147 (57.82%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L  NP  G  AG ++E N FEW   I+GP DT +E G F AI+SFP +YP SPP ++FT +++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE+I+LS++SML+ PNDES ANV+A+K WRD R+ F K   + V++S
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.994e-47
Identity = 85/147 (57.82%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L  NP  G  AG ++E N FEW   I+GP DT +E G F AI+SFP +YP SPP ++FT +++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE+I+LS++SML+ PNDES ANV+A+K WRD R+ F K   + V++S
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.994e-47
Identity = 85/147 (57.82%), Postives = 111/147 (75.51%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L  NP  G  AG ++E N FEW   I+GP DT +E G F AI+SFP +YP SPP ++FT +++HPN+YPDGRVCISILH PGDDP GYE ++ERW PV +VE+I+LS++SML+ PNDES ANV+A+K WRD R+ F K   + V++S
Sbjct:   16 LTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.745e-43
Identity = 82/147 (55.78%), Postives = 101/147 (68.71%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L K+   G  AG   E NIF W   I GPPDT Y  G FNA + FP +YP SPP + FT  I HPN+YP+G VCISILH PGDDPN YELA ERW PV +VE+I+LS++SMLS PN ES AN++A   WRD R +F+++V   + +S
Sbjct:   16 LIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKS 162          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.837e-42
Identity = 82/174 (47.13%), Postives = 111/174 (63.79%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAA---KEWRDRRDDFKKKVSRCVRRSQEML*TNCKHSFFSLPMCLYGKCL 636
            L + PV GF   LVDE++++ W V I GPP+TLYEGG+F A + FP +YP SPPT +F TK+WHPN+Y +G VCISILHPP DDP   EL SERW P   V  I+LS+IS+L+ PN  SPANV+A+   ++WRD +    K+ +  +R+         +     +P  L   C+
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGK-DKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCI 192          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.837e-42
Identity = 82/174 (47.13%), Postives = 111/174 (63.79%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAA---KEWRDRRDDFKKKVSRCVRRSQEML*TNCKHSFFSLPMCLYGKCL 636
            L + PV GF   LVDE++++ W V I GPP+TLYEGG+F A + FP +YP SPPT +F TK+WHPN+Y +G VCISILHPP DDP   EL SERW P   V  I+LS+IS+L+ PN  SPANV+A+   ++WRD +    K+ +  +R+         +     +P  L   C+
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGK-DKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCI 192          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.837e-42
Identity = 82/174 (47.13%), Postives = 111/174 (63.79%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAA---KEWRDRRDDFKKKVSRCVRRSQEML*TNCKHSFFSLPMCLYGKCL 636
            L + PV GF   LVDE++++ W V I GPP+TLYEGG+F A + FP +YP SPPT +F TK+WHPN+Y +G VCISILHPP DDP   EL SERW P   V  I+LS+IS+L+ PN  SPANV+A+   ++WRD +    K+ +  +R+         +     +P  L   C+
Sbjct:   20 LQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGK-DKEYAEIIRKQVSATKAEAEKDGVKVPTTLAEYCI 192          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC7_SCHPO (Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosaccharomyces pombe GN=ubc3 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.407e-41
Identity = 77/148 (52.03%), Postives = 105/148 (70.95%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            +L +N   G +AG  +E + F W   I GP  T +EGG + A + FPS+YP  PPT+KF  + +HPNVY DG VCISILH PGDDPN YE +SERW PV +VE+I+LS++SML+ PNDES AN++A K WR+ R+++ + V R  R++
Sbjct:   16 ELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARKT 163          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.247e-39
Identity = 73/136 (53.68%), Postives = 95/136 (69.85%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAA---KEWRDRR 522
            L + PV GF   LVDE +++ W V I GPP+T YEGG+F A + FP +YP SPP  +F TK+WHPN+Y  G VCISILHPP DDP   EL SERW P   V  I+LS+IS+L+ PN  SPANV+A+   ++W++ +
Sbjct:   20 LQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESK 155          
The following BLAST results are available for this feature:
BLAST of CB294007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
UB2G2_BOVIN3.823e-4757.82Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UB2G2_PONAB4.994e-4757.82Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE4.994e-4757.82Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN4.994e-4757.82Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UBC7_YEAST9.745e-4355.78Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2R2_RABIT4.837e-4247.13Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE4.837e-4247.13Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN4.837e-4247.13Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBC7_SCHPO1.407e-4152.03Ubiquitin-conjugating enzyme E2-18 kDa OS=Schizosa... [more]
UB2R1_MOUSE2.247e-3953.68Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294007 ID=CB294007; Name=CB294007; organism=Citrus sinensis; type=EST; length=660bp
CGCACTAGGCTCAGTTTCTCTCTCAAATATCTGTAGAGGTAGAGCCAATT
CCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTCC
TCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTTT
TCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAAT
TATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTA
TGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTACA
ACAAAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATATC
AATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGTG
AGCGCTGGATGCCTGTTCATACTGTTGAAAGGATCGTTTTGAGTATCATA
TCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTGC
AAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAAGCCGCT
GTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAAGCACTCTTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTG
back to top