CB294007

Overview
NameCB294007
Unique NameCB294007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 46/147 (31.29%), Postives = 75/147 (51.02%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRR 561
            ++  +P    SAG   + NI+EW  TI+GPP ++YEGG F   ++F  +YP  PP V F T+I+H N+   G +C+ IL              + W P  T+ +++LSI S+L+  N   P     A ++   R +  +   +  +R
Sbjct:   66 EITLDPPPNCSAGPKGD-NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKR 198          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.046e-16
Identity = 43/131 (32.82%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRD 516
            L ++P  G  A   ++ N+  + +T+ GP  + YEGG F+  +  P  YP  PP V+F TKI+HPNV   GR+C+S L              + W P   +  ++LSI +++ +PN + P + + AK W++
Sbjct:   14 LTRDPPPGIVAAPTED-NLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTL-------------KKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKE 130          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2N_DICDI (Probable ubiquitin-conjugating enzyme E2 N OS=Dictyostelium discoideum GN=ube2n PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 45/130 (34.62%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWR 513
            L   P  G SA    + N   + V I GP D+ +EGG FN  +    +YP S P V+F TKI+HPN+   GR+C+ IL              ++W P   +  ++LSI ++LS+PN + P   + A+ W+
Sbjct:   15 LMTEPAPGISATPATD-NFRYFKVAISGPLDSPFEGGVFNLELFLTDDYPMSAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEHWK 130          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 40/136 (29.41%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  163 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQE 570
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F TKI+HPN+   G+VC+ +            +++E W P    ++++ S+I++++ P  E P   + A+E+   R  F K      ++  E
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 40/136 (29.41%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  163 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQE 570
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F TKI+HPN+   G+VC+ +            +++E W P    ++++ S+I++++ P  E P   + A+E+   R  F K      ++  E
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 40/136 (29.41%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  163 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQE 570
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F TKI+HPN+   G+VC+ +            +++E W P    ++++ S+I++++ P  E P   + A+E+   R  F K      ++  E
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.954e-16
Identity = 40/136 (29.41%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  163 VDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQE 570
            VDE N+  W   I+ P +  Y+ G F   ++FP+ YP  PP + F TKI+HPN+   G+VC+ +            +++E W P    ++++ S+I++++ P  E P   + A+E+   R  F K      ++  E
Sbjct:   27 VDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPV------------ISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGE 149          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.776e-16
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDD 528
            ++  +P    SAG   + N++EW  TI+GPP ++YEGG F   + F   YP  PP V F T+I+H N+   G +C+ IL              + W P  T+ +++LSI S+L+  N   P     A ++   R++
Sbjct:   97 EITLDPPPNCSAGPKGD-NLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDIL-------------KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREE 218          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.776e-16
Identity = 45/143 (31.47%), Postives = 70/143 (48.95%), Query Frame = 1
Query:  133 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558
            +P A  +   V E++I     T +GPP T YEGG F   +  P  YP  PP ++F TK++HPN+    G +C+ IL                W PV T++  ++S+ ++L SP    P + E A+ +   R+ F K  +   R
Sbjct:   17 DPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDIL-------------KNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTR 146          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.016e-15
Identity = 46/139 (33.09%), Postives = 69/139 (49.64%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540
            L  +PV G +A   D+ N+  + VTI GP  + YE G F   +  P +YP   P V+F TKI+HPN+   GR+C+ +L                W P   +  ++LSI ++L+SPN   P   + A++W       K K
Sbjct:   15 LVSDPVPGITAEPHDD-NLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVL-------------KTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAK 139          
The following BLAST results are available for this feature:
BLAST of CB294007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
UB2E2_HUMAN1.567e-1631.29Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBC13_SCHPO2.046e-1632.82Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBE2N_DICDI5.954e-1634.62Probable ubiquitin-conjugating enzyme E2 N OS=Dict... [more]
UB2L3_PONAB5.954e-1629.41Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE5.954e-1629.41Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN5.954e-1629.41Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN5.954e-1629.41Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBCD2_DROME7.776e-1632.35Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC1_YEAST7.776e-1631.47Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBC13_YEAST1.016e-1533.09Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294007 ID=CB294007; Name=CB294007; organism=Citrus sinensis; type=EST; length=660bp
CGCACTAGGCTCAGTTTCTCTCTCAAATATCTGTAGAGGTAGAGCCAATT
CCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTCC
TCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTTT
TCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAAT
TATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTA
TGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTACA
ACAAAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATATC
AATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGTG
AGCGCTGGATGCCTGTTCATACTGTTGAAAGGATCGTTTTGAGTATCATA
TCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTGC
AAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAAGCCGCT
GTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAAGCACTCTTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTG
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