CB294007

Overview
NameCB294007
Unique NameCB294007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2F_XENLA (NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis GN=ube2f PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.241e-13
Identity = 38/121 (31.40%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  202 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSS-PNDESPANVEAAKEWRDRRDDFKKKVSRCVRR 561
            + P ++ Y+GG F   +  P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T++ +V  + S+ +   N + P N+EAA+     +D+++ KV   ++R
Sbjct:   69 VSPDESYYQGGRFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKDEYRNKVEDYIKR 182          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.241e-13
Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 1
Query:  199 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYP-DGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDF 531
            I GPPDT YEGG F   +  P  YP +PP V+F T+IWHPN+    G +C+ IL              + W    T+  ++LS+ ++L++   + P +   A +++D+ D F
Sbjct:   43 IAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDIL-------------KDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLF 141          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.241e-13
Identity = 39/138 (28.26%), Postives = 69/138 (50.00%), Query Frame = 1
Query:  145 GFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558
            G +    D  +I  ++++I  P D LY+   F   ++ PS YP  PP V   T ++HPN+  +G VC++IL              + WMPV  +  ++  ++++   PN + P N +AA+   D +  F+  V + +R
Sbjct:   94 GCAVSFKDTNDILNFNLSIT-PTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILR-------------QDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVRQSLR 217          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 43/140 (30.71%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540
            D+   P  G    L++E+++ +    I GP  T Y  G F   ++   ++P +PP   F TKI+HPNV  +G +C++ L              + W P   ++ I+L+I  +L  PN ES  N EA K   +R DD+ ++
Sbjct:   25 DMETTPPEGIKV-LINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTL-------------KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQR 150          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila simulans GN=GD17343 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  160 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540
            L++E+++ +    I GP  T Y  G F   ++   ++P +PP   F TKI+HPNV  +G +C++ L              + W P   ++ I+L+I  +L  PN ES  N EA K   +R DD+ ++
Sbjct:   37 LINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTL-------------KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQR 150          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_DROSE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila sechellia GN=GM13299 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  160 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540
            L++E+++ +    I GP  T Y  G F   ++   ++P +PP   F TKI+HPNV  +G +C++ L              + W P   ++ I+L+I  +L  PN ES  N EA K   +R DD+ ++
Sbjct:   37 LINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTL-------------KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQR 150          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPS (Ubiquitin-conjugating enzyme E2 S OS=Drosophila pseudoobscura pseudoobscura GN=GA22810 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  160 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540
            L++E+++ +    I GP  T Y  G F   ++   ++P +PP   F TKI+HPNV  +G +C++ L              + W P   ++ I+L+I  +L  PN ES  N EA K   +R DD+ ++
Sbjct:   37 LINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTL-------------KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQR 150          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_DROPE (Ubiquitin-conjugating enzyme E2 S OS=Drosophila persimilis GN=GL16001 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  160 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540
            L++E+++ +    I GP  T Y  G F   ++   ++P +PP   F TKI+HPNV  +G +C++ L              + W P   ++ I+L+I  +L  PN ES  N EA K   +R DD+ ++
Sbjct:   37 LINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAGNGEICVNTL-------------KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQR 150          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_DROME (Ubiquitin-conjugating enzyme E2 S OS=Drosophila melanogaster GN=CG8188 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 1
Query:  160 LVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540
            L++E+++ +    I GP  T Y  G F   ++   ++P +PP   F TKI+HPNV  +G +C++ L              + W P   ++ I+L+I  +L  PN ES  N EA K   +R DD+ ++
Sbjct:   37 LINESDVTDIQALIDGPAGTPYAAGIFRVKLTLNKDFPLTPPKAYFLTKIFHPNVAANGEICVNTL-------------KKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQR 150          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 42/120 (35.00%), Postives = 57/120 (47.50%), Query Frame = 1
Query:  199 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558
            II P +  Y  G F       SNYP+ PP VK  T+++HPN+  DG VC++IL              E W PV  +  IV  +  +   PN E P N EAA   +  R  F+  V + +R
Sbjct:   60 IISPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILR-------------EDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMR 166          
The following BLAST results are available for this feature:
BLAST of CB294007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
UBE2F_XENLA1.241e-1331.40NEDD8-conjugating enzyme UBE2F OS=Xenopus laevis G... [more]
UBCD4_DROME1.241e-1333.93Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC12_DICDI1.241e-1328.26NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBE2S_DROVI1.621e-1330.71Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UBE2S_DROSI1.621e-1331.50Ubiquitin-conjugating enzyme E2 S OS=Drosophila si... [more]
UBE2S_DROSE1.621e-1331.50Ubiquitin-conjugating enzyme E2 S OS=Drosophila se... [more]
UBE2S_DROPS1.621e-1331.50Ubiquitin-conjugating enzyme E2 S OS=Drosophila ps... [more]
UBE2S_DROPE1.621e-1331.50Ubiquitin-conjugating enzyme E2 S OS=Drosophila pe... [more]
UBE2S_DROME1.621e-1331.50Ubiquitin-conjugating enzyme E2 S OS=Drosophila me... [more]
UBC12_DROME1.621e-1335.00NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294007 ID=CB294007; Name=CB294007; organism=Citrus sinensis; type=EST; length=660bp
CGCACTAGGCTCAGTTTCTCTCTCAAATATCTGTAGAGGTAGAGCCAATT
CCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTCC
TCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTTT
TCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAAT
TATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTA
TGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTACA
ACAAAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATATC
AATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGTG
AGCGCTGGATGCCTGTTCATACTGTTGAAAGGATCGTTTTGAGTATCATA
TCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTGC
AAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAAGCCGCT
GTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAAGCACTCTTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTG
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