CB294007

Overview
NameCB294007
Unique NameCB294007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  166 DETNIFEWSVTIIGPPDTL-YEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540
            D+ N+  W + ++  PD L Y    F   + FP  YP  PPT++FTTKI+HPN+  DG VC+ +            +++E W P     +++ ++  ++S PN E P  +E A       + F+KK
Sbjct:   28 DDANVLVWHMLLL--PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPL------------ISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKK 139          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 1
Query:  166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSR 549
            ++  + +    I+G  +T YE G F   +  P  YP  PP V+F T I+HPN+   GR+C+ IL  P   P G       W P   +  ++ SI  +++ PN + P   + + E++  +  F KK  +
Sbjct:   27 EKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLP---PKG------AWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQ 145          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12
Identity = 45/140 (32.14%), Postives = 70/140 (50.00%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540
            DL  +P  G      +E +I +   TI GP  T YEGG F   +S   ++P +PP   F TKI+HPNV  +G +C++ L              + W     ++ I+L+I  +L  PN ES  N EA K   ++ D++ ++
Sbjct:   24 DLANHPPEGVKV-FPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTL-------------KKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSER 149          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 1
Query:  199 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558
            +I P +  Y+ G F         YP+ PP VK  T ++HPN+  +G VC++IL              E W PV T+  I+  +  +   PN E P N EAA+  ++ R  F++ V R +R
Sbjct:   63 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 1
Query:  199 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558
            +I P +  Y+ G F         YP+ PP VK  T ++HPN+  +G VC++IL              E W PV T+  I+  +  +   PN E P N EAA+  ++ R  F++ V R +R
Sbjct:   63 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12
Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 1
Query:  199 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558
            +I P +  Y+ G F         YP+ PP VK  T ++HPN+  +G VC++IL              E W PV T+  I+  +  +   PN E P N EAA+  ++ R  F++ V R +R
Sbjct:   63 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 40/132 (30.30%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSS-PNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558
            DE  +  + + I  P +  Y GG F   +  P  Y   PP VK  T+IWHPN+   G +C+S+L     D  G       W P  T++ +V  + S+ +   N + P N++AA+     ++DF+ KV   ++
Sbjct:   58 DENKLCHFQLAI-SPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIK 181          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 37/124 (29.84%), Postives = 61/124 (49.19%), Query Frame = 1
Query:  166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKK 537
            D+  + +    I+G  +T YE G F   +  P  YP  PP ++F T I+HPN+   GR+C+ +L  P   P G       W P   +  ++ SI  ++S PN + P   + + E++  +  F K
Sbjct:   27 DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLP---PKG------AWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLK 141          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  205 GPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPD-GRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDF 531
            GP  T YEGG+F   +  P +YP  PP + F TKI+HPNV    G +C+ IL              ++W PV+T++  ++S+ S+L +P   +P + + A+ +      F
Sbjct:   42 GPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDIL-------------KDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQF 138          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  133 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKI-WHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISML-SSPNDESPAN 489
            NP  GF   + D  N+ +W + + G P TLY    +N  + FP +YP   P V F      HP++Y +G +C+ IL+             + W P  TV  + +SI+SML SSP  + P +
Sbjct:   30 NPPTGFKHRVTD--NLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSSSPEKQRPTD 135          
The following BLAST results are available for this feature:
BLAST of CB294007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
UB2L6_RAT8.047e-1331.75Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus... [more]
UBE2T_MOUSE1.051e-1229.69Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBE2S_BRAFL1.051e-1232.14Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBC12_MOUSE1.793e-1232.50NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN1.793e-1232.50NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN1.793e-1232.50NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBE2F_DANRE2.341e-1230.30NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBE2T_HUMAN3.058e-1229.84Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
UBC1_SCHPO3.058e-1232.73Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBC18_ARATH3.058e-1233.06Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294007 ID=CB294007; Name=CB294007; organism=Citrus sinensis; type=EST; length=660bp
CGCACTAGGCTCAGTTTCTCTCTCAAATATCTGTAGAGGTAGAGCCAATT
CCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTCC
TCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTTT
TCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAAT
TATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTA
TGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTACA
ACAAAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATATC
AATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGTG
AGCGCTGGATGCCTGTTCATACTGTTGAAAGGATCGTTTTGAGTATCATA
TCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTGC
AAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAAGCCGCT
GTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAAGCACTCTTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTG
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