CB294007
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2L6_RAT (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Rattus norvegicus GN=Ube2l6 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13 Identity = 40/126 (31.75%), Postives = 65/126 (51.59%), Query Frame = 1 Query: 166 DETNIFEWSVTIIGPPDTL-YEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540 D+ N+ W + ++ PD L Y F + FP YP PPT++FTTKI+HPN+ DG VC+ + +++E W P +++ ++ ++S PN E P +E A + F+KK Sbjct: 28 DDANVLVWHMLLL--PDQLPYRLKAFGLRIDFPREYPLKPPTLRFTTKIYHPNISEDGLVCLPL------------ISTENWKPYTKAYQVLEALNILVSRPNLEEPVRLELADLLTQDPEMFRKK 139
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12 Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = 1 Query: 166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSR 549 ++ + + I+G +T YE G F + P YP PP V+F T I+HPN+ GR+C+ IL P P G W P + ++ SI +++ PN + P + + E++ + F KK + Sbjct: 27 EKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEPPQVRFLTPIYHPNIDSSGRICLDILKLP---PKG------AWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQ 145
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.051e-12 Identity = 45/140 (32.14%), Postives = 70/140 (50.00%), Query Frame = 1 Query: 121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKK 540 DL +P G +E +I + TI GP T YEGG F +S ++P +PP F TKI+HPNV +G +C++ L + W ++ I+L+I +L PN ES N EA K ++ D++ ++ Sbjct: 24 DLANHPPEGVKV-FPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTL-------------KKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSER 149
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12 Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 1 Query: 199 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558 +I P + Y+ G F YP+ PP VK T ++HPN+ +G VC++IL E W PV T+ I+ + + PN E P N EAA+ ++ R F++ V R +R Sbjct: 63 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12 Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 1 Query: 199 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558 +I P + Y+ G F YP+ PP VK T ++HPN+ +G VC++IL E W PV T+ I+ + + PN E P N EAA+ ++ R F++ V R +R Sbjct: 63 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.793e-12 Identity = 39/120 (32.50%), Postives = 59/120 (49.17%), Query Frame = 1 Query: 199 IIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558 +I P + Y+ G F YP+ PP VK T ++HPN+ +G VC++IL E W PV T+ I+ + + PN E P N EAA+ ++ R F++ V R +R Sbjct: 63 VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILR-------------EDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 169
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12 Identity = 40/132 (30.30%), Postives = 65/132 (49.24%), Query Frame = 1 Query: 166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSS-PNDESPANVEAAKEWRDRRDDFKKKVSRCVR 558 DE + + + I P + Y GG F + P Y PP VK T+IWHPN+ G +C+S+L D G W P T++ +V + S+ + N + P N++AA+ ++DF+ KV ++ Sbjct: 58 DENKLCHFQLAI-SPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTG-------WAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIK 181
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12 Identity = 37/124 (29.84%), Postives = 61/124 (49.19%), Query Frame = 1 Query: 166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKK 537 D+ + + I+G +T YE G F + P YP PP ++F T I+HPN+ GR+C+ +L P P G W P + ++ SI ++S PN + P + + E++ + F K Sbjct: 27 DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLP---PKG------AWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLK 141
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12 Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 1 Query: 205 GPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPD-GRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDF 531 GP T YEGG+F + P +YP PP + F TKI+HPNV G +C+ IL ++W PV+T++ ++S+ S+L +P +P + + A+ + F Sbjct: 42 GPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDIL-------------KDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQF 138
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12 Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = 1 Query: 133 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKI-WHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISML-SSPNDESPAN 489 NP GF + D N+ +W + + G P TLY +N + FP +YP P V F HP++Y +G +C+ IL+ + W P TV + +SI+SML SSP + P + Sbjct: 30 NPPTGFKHRVTD--NLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSVCISILSMLSSSPEKQRPTD 135 The following BLAST results are available for this feature:
BLAST of CB294007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 221
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Sequences
The
following sequences are available for this feature:
EST sequence >CB294007 ID=CB294007; Name=CB294007; organism=Citrus sinensis; type=EST; length=660bpback to top |