CB294007

Overview
NameCB294007
Unique NameCB294007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 40/121 (33.06%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  133 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKI-WHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISML-SSPNDESPAN 489
            NP  GF   + D  N+ +W++ + G P TLY    +   + FP +YP   P V F +    HP++Y +G +C+ IL+             + W P  TV  + +SI+SML SSP  + PA+
Sbjct:   30 NPPTGFRHKVTD--NLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILY-------------DSWSPAMTVNSVCISILSMLSSSPAKQRPAD 135          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 41/116 (35.34%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  160 LVDETNIFEWSVTIIGPPDT-LYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAK 504
            ++   N  E S+ II  PD   Y+GG F    +F   YP  PP V    KI+HPN+ P G++C++IL              E W P   ++ IVL ++S+   PN   P N EAA+
Sbjct:   54 IISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILR-------------EDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAE 156          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 72.0182 bits (175), Expect = 3.058e-12
Identity = 42/147 (28.57%), Postives = 67/147 (45.58%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRR 561
            DL K P         D+ N+  W   ++ P    Y    FN  +SFP  YP  PP +KFTTKI+HPNV  +G++C+ I            ++SE W P     +++ ++  +++ PN   P  ++ A       + F+K       R
Sbjct:   13 DLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPI------------ISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLR 146          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  169 ETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTK--IWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSS 465
            + +I +W V + G P TLYEG  F  +  F S YP   P V FT +    HP+VY +G +C+SIL             +E W P  +V+ + LSIISMLSS
Sbjct:   31 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSIL-------------TEDWSPALSVQSVCLSIISMLSS 118          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 41/101 (40.59%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  169 ETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTK--IWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSS 465
            + +I +W V + G P TLYEG  F  +  F S YP   P V FT +    HP+VY +G +C+SIL             +E W P  +V+ + LSIISMLSS
Sbjct:   31 QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSIL-------------TEDWSPALSVQSVCLSIISMLSS 118          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_RAT (Ubiquitin-conjugating enzyme E2 S OS=Rattus norvegicus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAK 504
            +E ++ +  VTI GP  T Y GG F   +    ++P SPP   F TKI+HPNV P+G +C+++L                W     +  ++L+I  +L  PN ES  N EA +
Sbjct:   36 NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVL-------------KRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGR 135          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAK 504
            +E ++ +  VTI GP  T Y GG F   +    ++P SPP   F TKI+HPNV P+G +C+++L                W     +  ++L+I  +L  PN ES  N EA +
Sbjct:   36 NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVL-------------KRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGR 135          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 39/116 (33.62%), Postives = 57/116 (49.14%), Query Frame = 1
Query:  133 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKI-WHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDE 477
            NP  GF   + D  N+  W + +IG P TLY    +   + FP +YP   P V F      HP++Y +G +C+ IL+             + W P  TV  I +SI+SMLSS  ++
Sbjct:   30 NPPTGFKHKVTD--NLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSICISILSMLSSSTEK 130          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAK 504
            +E ++ +  VTI GP  T Y GG F   +    ++P SPP   F TKI+HPNV P+G +C+++L                W     +  ++L+I  +L  PN ES  N EA +
Sbjct:   36 NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVL-------------KRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGR 135          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 34/114 (29.82%), Postives = 57/114 (50.00%), Query Frame = 1
Query:  202 IGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKV 543
            + P +  Y+GG F        N+P+ PP VK   K++HPN+  +G VC++IL              E W PV ++  +++ +  +   PN   P N +AA +    R++FK+ V
Sbjct:   59 VRPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILR-------------EDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNV 159          
The following BLAST results are available for this feature:
BLAST of CB294007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
UBC15_ARATH3.058e-1233.06Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC12_CANGA3.058e-1235.34NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UB2L6_HUMAN3.058e-1228.57Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UBE2W_MOUSE3.993e-1240.59Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN3.993e-1240.59Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBE2S_RAT6.812e-1233.63Ubiquitin-conjugating enzyme E2 S OS=Rattus norveg... [more]
UBE2S_MOUSE6.812e-1233.63Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UBC16_ARATH6.812e-1233.62Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UB2SA_XENLA6.812e-1233.63Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBC12_YARLI8.897e-1229.82NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294007 ID=CB294007; Name=CB294007; organism=Citrus sinensis; type=EST; length=660bp
CGCACTAGGCTCAGTTTCTCTCTCAAATATCTGTAGAGGTAGAGCCAATT
CCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTCC
TCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTTT
TCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAAT
TATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTA
TGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTACA
ACAAAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATATC
AATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGTG
AGCGCTGGATGCCTGTTCATACTGTTGAAAGGATCGTTTTGAGTATCATA
TCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTGC
AAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAAGCCGCT
GTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAAGCACTCTTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTG
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