CB294007

Overview
NameCB294007
Unique NameCB294007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.279e-26
Identity = 62/146 (42.47%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  133 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQE 570
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V  I+ SI S+L+ PN  SPANVEA+  +RD R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWE 150          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.849e-26
Identity = 61/146 (41.78%), Postives = 84/146 (57.53%), Query Frame = 1
Query:  133 NPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQE 570
            +P AG SA  V + N+  W+  IIGP DT +E G F  +M F   YPN PP VKF ++++HPNVY  G +C+ IL               RW P + V  I+ SI S+L+ PN  SPANVEA+  ++D R ++ K+V   V +S E
Sbjct:   19 DPPAGVSASPVAD-NVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDIL-------------QNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSWE 150          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.859e-26
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L ++P  G S G   E NI +W+  I GP  T +E G F  ++ F   YPN PPTV+F +K++HPNVY DG +C+ IL               RW P + V  I+ SI S+L  PN  SPAN +AA+ +++ + +++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.859e-26
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L ++P  G S G   E NI +W+  I GP  T +E G F  ++ F   YPN PPTV+F +K++HPNVY DG +C+ IL               RW P + V  I+ SI S+L  PN  SPAN +AA+ +++ + +++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.859e-26
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L ++P  G S G   E NI +W+  I GP  T +E G F  ++ F   YPN PPTV+F +K++HPNVY DG +C+ IL               RW P + V  I+ SI S+L  PN  SPAN +AA+ +++ + +++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.859e-26
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L ++P  G S G   E NI +W+  I GP  T +E G F  ++ F   YPN PPTV+F +K++HPNVY DG +C+ IL               RW P + V  I+ SI S+L  PN  SPAN +AA+ +++ + +++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.859e-26
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L ++P  G S G   E NI +W+  I GP  T +E G F  ++ F   YPN PPTV+F +K++HPNVY DG +C+ IL               RW P + V  I+ SI S+L  PN  SPAN +AA+ +++ + +++K+VS  V +S
Sbjct:   16 LQEDPPVGVS-GAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.346e-26
Identity = 56/146 (38.36%), Postives = 88/146 (60.27%), Query Frame = 1
Query:  142 AGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISIL-HPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRSQEML 576
            + +  G ++  +   W +      D+LY G    A+M FPS+YP  PPT+KF +K++HPN+Y DG++CISIL      D + +    ++W PV  +  IV+SI+ +L+SPN  SPANV+A+  +RD  +++ K+V R  R   E L
Sbjct:   53 SAYPRGSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIAREEDEKL 198          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.082e-25
Identity = 59/147 (40.14%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L ++P AG S G   E NI  W+  I GP  T +E G F   + F   YPN PPTV+F +K++HPNVY DG +C+ IL               RW P + V  I+ SI S+L  PN  SPAN +AA+ +++ + +++K+VS  V +S
Sbjct:   16 LQEDPPAGVS-GAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.082e-25
Identity = 59/147 (40.14%), Postives = 84/147 (57.14%), Query Frame = 1
Query:  124 LCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            L ++P AG S G   E NI  W+  I GP  T +E G F   + F   YPN PPTV+F +K++HPNVY DG +C+ IL               RW P + V  I+ SI S+L  PN  SPAN +AA+ +++ + +++K+VS  V +S
Sbjct:   16 LQEDPPAGVS-GAPSENNIMVWNAVIFGPEGTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDIL-------------QNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQS 148          
The following BLAST results are available for this feature:
BLAST of CB294007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
UBC2_EMENI1.279e-2642.47Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_ASPFU2.849e-2641.78Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBE2B_RAT4.859e-2639.46Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT4.859e-2639.46Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE4.859e-2639.46Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN4.859e-2639.46Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN4.859e-2639.46Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
Y1A1_ENCCU6.346e-2638.36Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBE2A_MOUSE1.082e-2540.14Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN1.082e-2540.14Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294007 ID=CB294007; Name=CB294007; organism=Citrus sinensis; type=EST; length=660bp
CGCACTAGGCTCAGTTTCTCTCTCAAATATCTGTAGAGGTAGAGCCAATT
CCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTCC
TCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTTT
TCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAAT
TATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTA
TGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTACA
ACAAAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATATC
AATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGTG
AGCGCTGGATGCCTGTTCATACTGTTGAAAGGATCGTTTTGAGTATCATA
TCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTGC
AAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAAGCCGCT
GTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAAGCACTCTTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTG
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