CB294007

Overview
NameCB294007
Unique NameCB294007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.147e-21
Identity = 51/138 (36.96%), Postives = 77/138 (55.80%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFK 534
            DL K+P    SAG V E ++F W  TI+GP ++ Y GG F   + FP +YP  PP V F TK++HPN+  +G +C+ IL              E+W P  T+ +++LSI S+L+ PN + P   E A  ++  R  ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 135          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.028e-21
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFK 534
            DL K+P    SAG V E ++F W  TI+GP ++ Y GG F   + FP +YP  PP V F TK++HPN+  +G +C+ IL              E+W P  T+ +++LSI S+L+ PN + P   E A  ++  ++ ++
Sbjct:   12 DLQKDPPTSCSAGPVAE-DMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYE 135          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.788e-20
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 1
Query:  175 NIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRRS 564
            ++  W V I G P T +EGG +   M+FP  YP  PP  +FT  ++HPNVYP G VC+SIL+             E W P  T+++I+L I  +L  PN  SPA  EA   ++  + +++K+V    R +
Sbjct:   37 DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILN-----------EEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQAREN 155          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.336e-20
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  166 DETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKK 537
            D  NIF+W  TI GP +T+Y G  +   + FP++YP + P VKF T  +HPNV   G +C+ IL              ++W  ++ V  I+LSI S+L  PN+ESP N +AA  W D++ ++KK
Sbjct:   57 DGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDIL-------------KDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK-EYKK 166          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.984e-20
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFK 534
            DL ++P +  SAG V + +++ W  +I+GPPD+ Y GG F   + FP++YP  PP +  TTKI+HPN+  +G +C+ IL              ++W P  T+ +++LSI S+L+  N + P   E A  ++  R  ++
Sbjct:   12 DLGRDPPSSCSAGPVGD-DLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDIL-------------KDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYE 135          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.204e-20
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRR 522
            DL ++P    SAG   + ++F+W  TI+GP D+ + GG F   + FP +YP  PP V F TK++HPN+  +G +C+ IL              E+W P  TV +++LSI S+L+ PN + P   E A  ++  R
Sbjct:   12 DLQRDPPVSCSAGPTGD-DMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDIL-------------KEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDR 131          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 48/131 (36.64%), Postives = 76/131 (58.02%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWR 513
            DL ++P A  SAG V + +++ W  +I+GP D+ Y GG F   + FP++YP  PP V FTTKI+HPN+   G +C+ IL              ++W P  T+ +++LSI S+L+  N + P   E A+ ++
Sbjct:   13 DLGRDPPASCSAGPVGD-DLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDIL-------------KDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYK 129          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 48/138 (34.78%), Postives = 74/138 (53.62%), Query Frame = 1
Query:  148 FSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKKKVSRCVRR 561
            FS G  +  NI+EW+  I GP  T YEGG FN  + FP++YP  PP   F T I+HPN+  +G +C++IL              ++W P   VE+++LSI+ +L  PN + P   E  + +++ R  F ++      R
Sbjct:   27 FSIGQ-NSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNIL-------------KDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTAR 150          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.876e-20
Identity = 47/139 (33.81%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFKK 537
            DL ++P+      LVD+ N+F W+ T +GP D++Y GG F+  + FP +YP  PPT++FTT+I+HPN   +G VC++I            L  + + P   +  ++  I+ +L  PN + P     A+++R+ R  F K
Sbjct:   18 DLREHPIPDIRVNLVDD-NLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAI------------LKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDK 143          
BLAST of CB294007 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.977e-19
Identity = 47/138 (34.06%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  121 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTKIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVERIVLSIISMLSSPNDESPANVEAAKEWRDRRDDFK 534
            DL ++P    SAG V + +++ W  +I+GP D+ Y GG F   + FP++YP  PP + FTTKI+HPN+  +G +C+ IL              ++W P  T+ +++LSI S+L+  N + P   E A  ++  R  ++
Sbjct:   13 DLERDPPTSCSAGPVGD-DLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNINANGNICLDIL-------------KDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYE 136          
The following BLAST results are available for this feature:
BLAST of CB294007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
UBC8_ARATH6.147e-2136.96Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH8.028e-2136.23Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_SCHPO1.788e-2036.92SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBE2C_DROME2.336e-2039.52Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC4_CANAL3.984e-2034.06Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UBC30_ARATH5.204e-2036.57Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC5_YEAST8.876e-2036.64Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC31_ARATH8.876e-2034.78Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC14_SCHPO8.876e-2033.81Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC4_YEAST1.977e-1934.06Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06ah10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06ah10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294007 ID=CB294007; Name=CB294007; organism=Citrus sinensis; type=EST; length=660bp
CGCACTAGGCTCAGTTTCTCTCTCAAATATCTGTAGAGGTAGAGCCAATT
CCAGCTCTCTCTCTCTACTAAAATCATGGCGGCATCTCAGGCAAGTCTCC
TCTTGCAAAAACAACTAAAAGATCTTTGTAAGAACCCTGTTGCTGGGTTT
TCTGCCGGGTTGGTGGATGAGACAAATATCTTTGAATGGAGTGTTACAAT
TATTGGACCACCTGATACTCTTTATGAGGGGGGATTTTTCAATGCCATTA
TGAGCTTTCCATCAAACTACCCTAATAGCCCACCTACAGTGAAGTTTACA
ACAAAGATTTGGCATCCTAATGTCTATCCGGATGGGCGTGTCTGCATATC
AATCCTTCATCCTCCAGGTGACGACCCTAATGGATATGAGCTTGCAAGTG
AGCGCTGGATGCCTGTTCATACTGTTGAAAGGATCGTTTTGAGTATCATA
TCAATGCTTTCCAGTCCTAATGATGAATCTCCTGCAAATGTCGAAGCTGC
AAAAGAATGGAGAGACAGGAGAGATGACTTCAAGAAGAAAGTAAGCCGCT
GTGTGAGAAGATCACAAGAAATGTTGTAAACCAACTGCAAGCACTCTTTT
TTTTCTCTACCTATGTGTTTGTACGGGAAATGTCTTGATTTAATTGTGTG
GGGGGAACTG
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