CB294009

Overview
NameCB294009
Unique NameCB294009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294009_ssr97 microsatellite CB294009_ssr97:97..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10238 contig Csv1_Contig10238:38..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK8_ORYSJ (Mitogen-activated protein kinase 8 OS=Oryza sativa subsp. japonica GN=MPK8 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 40/124 (32.26%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            Y  + V+G GS+G+V  A    TG+ VAIKK+      L D     RE++L+R++ HP+++ +KH     +R++   + +V E +   +++V+K    AN  +   + + + YQ+ R L YIHT
Sbjct:   13 YKIQEVIGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIK----ANDDLTKEHHQFFLYQMLRALKYIHT 132          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK7_ORYSJ (Mitogen-activated protein kinase 7 OS=Oryza sativa subsp. japonica GN=MPK7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 40/124 (32.26%), Postives = 70/124 (56.45%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            Y  + +VG GS+G+V  A    TG+ VAIKK+      L D     RE++L+R++ HP+++ +KH     +R++   + +V E +   +++V+K    AN  +   + + + YQ+ R L YIHT
Sbjct:   13 YKIQEIVGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIK----ANDDLTKEHHQFFLYQMLRALKYIHT 132          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK17_ORYSJ (Mitogen-activated protein kinase 17 OS=Oryza sativa subsp. japonica GN=MPK17 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 38/123 (30.89%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            Y    V+G GS+G+V  A   +TGE VAIKK+      + D     RE++L+R++ HP+++ +KH     +R+    + ++ E +   +++V+K    AN  +   + + + YQ+ RG+ YIH
Sbjct:  105 YKVSEVIGKGSYGVVAAAVDTQTGERVAIKKINDVFDHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVIFELMESDLHQVIK----ANDDLTPEHHQFFLYQLLRGMKYIH 223          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK17_ARATH (Mitogen-activated protein kinase 17 OS=Arabidopsis thaliana GN=MPK17 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  254 GEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            GE  Q   Y  + VVG GS+G+V  A+C  TG  VAIKK+      + D     RE++L+R++ HP+++ +KH      RK    + +V E +   ++ VLK     N  +   + + + YQ+ RGL ++H+
Sbjct:   11 GEASQ---YQIQEVVGKGSYGVVASAECPHTGGKVAIKKMTNVFEHVSDAIRILREIKLLRLLRHPDIVEIKHIMLPPCRKEFKDIYVVFELMESDLHHVLK----VNDDLTPQHHQFFLYQLLRGLKFMHS 135          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK20_ARATH (Mitogen-activated protein kinase 20 OS=Arabidopsis thaliana GN=MPK20 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            +  + V+G GS+G+V  A    TGE VAIKK+      + D     RE++L+R++ HP+++ +KH     +R+    + +V E +   +++V+K    AN  +   + + + YQ+ R L YIHT
Sbjct:   25 FKVQEVIGKGSYGVVCSAIDTLTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYVVFELMESDLHQVIK----ANDDLTREHYQFFLYQLLRALKYIHT 144          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK11_ORYSJ (Mitogen-activated protein kinase 11 OS=Oryza sativa subsp. japonica GN=MPK11 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 39/124 (31.45%), Postives = 69/124 (55.65%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            Y    V+G GS+G+V  A  + TGE VAIKK+      + D     RE++L+R++ HP+++ +KH     ++ +   + +V E +   +++V+K    AN  +   + + + YQ+ R L YIHT
Sbjct:   26 YEVLEVIGKGSYGLVCSANDIHTGEKVAIKKIHNIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSKMDFRDIYVVFELMESDLHQVIK----ANDDLTREHYQFFLYQMLRALKYIHT 145          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK12_ORYSJ (Mitogen-activated protein kinase 12 OS=Oryza sativa subsp. japonica GN=MPK12 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 41/131 (31.30%), Postives = 71/131 (54.20%), Query Frame = 2
Query:  254 GEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            GE  Q   Y  + V+G GS+G+V  A    TGE VAIKK+      + D     RE++L+R++ HP+++ +KH     +R+    + +V E +   +++V++    AN  +   + + + YQ+ R L YIH
Sbjct:   82 GEASQ---YQIQEVIGKGSYGVVAAAVDTRTGERVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFQDIYVVFELMESDLHQVIR----ANDDLTPEHYQFFLYQLLRALKYIH 205          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MRK1_ENCCU (Probable serine/threonine-protein kinase MRK1 homolog OS=Encephalitozoon cuniculi GN=MRK1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.673e-12
Identity = 41/125 (32.80%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  254 GEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            GE K+ + Y    ++G GSFG+V +    +     A+K+V QDRRY NREL ++  +DHPN++ L   F +    +  +LN++ ++V  +    L+ Y  AN+ +    ++    QI  GL Y+H
Sbjct:   49 GEVKE-VRYRYVEMIGRGSFGVVVKIMD-DRHNFFALKRVYQDRRYHNRELGILMEVDHPNIVRLVSYFHTDKTSSGAYLNIITDFVGMN----LEEYIKANRGVETEEIRSVYRQILEGLRYLH 167          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK16_ORYSJ (Mitogen-activated protein kinase 16 OS=Oryza sativa subsp. japonica GN=MPK16 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.182e-12
Identity = 38/123 (30.89%), Postives = 67/123 (54.47%), Query Frame = 2
Query:  278 YMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIH 628
            Y    VVG GS+G+V  A    TG  VAIKK+      + D     RE++L+R++ HP+++ +KH     +R+    + ++ E +   +++V+K    AN  +   + + + YQ+ RG+ YIH
Sbjct:   22 YEVTEVVGKGSYGVVAAAVDTHTGGRVAIKKINDVFEHISDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYIIFELMESDLHQVIK----ANDDLTPEHHQFFLYQLLRGMKYIH 140          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK4_ARATH (Mitogen-activated protein kinase 4 OS=Arabidopsis thaliana GN=MPK4 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 40/120 (33.33%), Postives = 70/120 (58.33%), Query Frame = 2
Query:  290 RVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            R +G G++GIV  A   ETGE VAIKK+      + D +   RE++L++ MDH NVI++K       R+N   + +V E +   ++++++    +NQ +   + + + YQ+ RGL Y+H+
Sbjct:   47 RPIGRGAYGIVCAATNSETGEEVAIKKIGNAFDNIIDAKRTLREIKLLKHMDHENVIAVKDIIKPPQRENFNDVYIVYELMDTDLHQIIR----SNQPLTDDHCRFFLYQLLRGLKYVHS 162          
The following BLAST results are available for this feature:
BLAST of CB294009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
MPK8_ORYSJ9.665e-1332.26Mitogen-activated protein kinase 8 OS=Oryza sativa... [more]
MPK7_ORYSJ9.665e-1332.26Mitogen-activated protein kinase 7 OS=Oryza sativa... [more]
MPK17_ORYSJ9.665e-1330.89Mitogen-activated protein kinase 17 OS=Oryza sativ... [more]
MPK17_ARATH9.665e-1332.58Mitogen-activated protein kinase 17 OS=Arabidopsis... [more]
MPK20_ARATH1.262e-1231.45Mitogen-activated protein kinase 20 OS=Arabidopsis... [more]
MPK11_ORYSJ1.262e-1231.45Mitogen-activated protein kinase 11 OS=Oryza sativ... [more]
MPK12_ORYSJ2.153e-1231.30Mitogen-activated protein kinase 12 OS=Oryza sativ... [more]
MRK1_ENCCU3.673e-1232.80Probable serine/threonine-protein kinase MRK1 homo... [more]
MPK16_ORYSJ8.182e-1230.89Mitogen-activated protein kinase 16 OS=Oryza sativ... [more]
MPK4_ARATH1.069e-1133.33Mitogen-activated protein kinase 4 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bc02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294009 ID=CB294009; Name=CB294009; organism=Citrus sinensis; type=EST; length=633bp
GCTTGGGTCCTCCTTTCTCTCATTCTCCATCGCCACACCATGATCATCAT
CTTCTCCCTCATCCACCGGTGAAATTTCTCCATTTCTCTTCCATCGCTCT
CTCTCTCTCTCTCTCTCCCTCCCTCTCTTTCTTCACCCCAATTTCTCTCC
AAATCTCCCCATGGCCGACGATAAGGAGATGTCTGCTGCTGTTGTTGATG
GGAGTGACCATGTCACTGGTCACATCATTTCCACCACCATTGGAGGCAAA
AATGGAGAGCCAAAACAGACTATTAGCTACATGGCGGAGCGTGTTGTGGG
AACTGGGTCATTTGGTATTGTCTTCCAGGCTAAATGCTTGGAAACTGGAG
AGACTGTGGCTATCAAGAAGGTTTTGCAGGACAGAAGATATAAGAATCGT
GAACTGCAGTTAATGCGGGTGATGGATCATCCAAATGTGATTTCTTTGAA
GCATTGTTTCTTTTCAACTACCAGAAAAAACGAACTTTTCCTCAACTTGG
TTATGGAATACGTACCAGAGAGCATGTATAGGGTTTTGAAGCATTACAGC
AGTGCAAATCAGAGAATGCCCCTCATATATGTGAAACTTTATACGTACCA
GATTTTCAGGGGCCTGGCTTACATCCACACTGT
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