CB294009

Overview
NameCB294009
Unique NameCB294009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294009_ssr97 microsatellite CB294009_ssr97:97..116. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10238 contig Csv1_Contig10238:38..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: KOM8_YEAST (Probable serine/threonine-protein kinase YOL128C OS=Saccharomyces cerevisiae GN=YOL128C PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.069e-11
Identity = 41/120 (34.17%), Postives = 71/120 (59.17%), Query Frame = 2
Query:  296 VGTGSFGIVFQA----KCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFS-TTRKNELFL---NLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            +G GSFG V Q+      +E     AIK+V++  + ++ EL++++ + HPN+++L+  F S  T K+   L   N VMEY+P+++   +  Y     +MP  ++KLYT+QI R L  +H+
Sbjct:   47 IGHGSFGTVTQSILSSNSIEWLGPYAIKRVVKSPKVQSLELEILQNIRHPNLVTLEFFFESHCTTKDGGHLYQKNFVMEYIPQTLSSEIHEYFDNGSKMPTKHIKLYTFQILRALLTLHS 166          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: CDK2_CARAU (Cell division protein kinase 2 OS=Carassius auratus GN=cdk2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.823e-11
Identity = 41/125 (32.80%), Postives = 70/125 (56.00%), Query Frame = 2
Query:  275 SYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKN------RELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            S+     +G G++G+V++AK   TGETVA+KK+  D   +       RE+ L++ ++HPN++ L H    T  K    L LV E++ + + R +   +     +PL  VK Y +Q+ +GLA+ H+
Sbjct:    3 SFQKVEKIGEGTYGVVYKAKNKVTGETVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL-HDVIHTENK----LYLVFEFLHQDLKRFMDSSTVTGISLPL--VKSYLFQLLQGLAFCHS 120          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MMK2_MEDSA (Mitogen-activated protein kinase homolog MMK2 OS=Medicago sativa GN=MMK2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 41/120 (34.17%), Postives = 68/120 (56.67%), Query Frame = 2
Query:  290 RVVGTGSFGIVFQAKCLETGETVAIKKVLQ------DRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            R VG G++GIV  A   ET E VAIKK+        D +   RE++L+R MDH NV+S+K       ++N   + +V E +   ++++++    +NQ M   + + + YQ+ RGL Y+H+
Sbjct:   41 RSVGRGAYGIVCAAVNAETREEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNHVYIVSELMDTDLHQIIR----SNQPMTDDHCRYFVYQLLRGLKYVHS 156          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK13_ORYSJ (Mitogen-activated protein kinase 13 OS=Oryza sativa subsp. japonica GN=MPK13 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 41/132 (31.06%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  254 GEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            GE  Q   Y  + VVG GS+G+V  A    TGE VAIKK+      + D     RE++++R++ HP+++ +KH     TR+    + +V E +   +++V++    AN  +   + + + YQ+   L YIH+
Sbjct:    8 GEASQ---YQIQEVVGKGSYGVVAAAVDTHTGERVAIKKINDVFEHVSDAIRILREIKVLRLLRHPDIVVIKHIMLPPTRREFRDIYVVFELMESDLHQVIE----ANHDLSPEHHRFFLYQLLCALKYIHS 132          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: MPK13_ORYSI (Mitogen-activated protein kinase 13 OS=Oryza sativa subsp. indica GN=MPK13 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 41/132 (31.06%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  254 GEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKV------LQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            GE  Q   Y  + VVG GS+G+V  A    TGE VAIKK+      + D     RE++++R++ HP+++ +KH     TR+    + +V E +   +++V++    AN  +   + + + YQ+   L YIH+
Sbjct:    8 GEASQ---YQIQEVVGKGSYGVVAAAVDTHTGERVAIKKINDVFEHVSDAIRILREIKVLRLLRHPDIVVIKHIMLPPTRREFRDIYVVFELMESDLHQVIE----ANHDLSPEHHRFFLYQLLCALKYIHS 132          
BLAST of CB294009 vs. ExPASy Swiss-Prot
Match: GLKA_DICDI (Probable serine/threonine-protein kinase glkA OS=Dictyostelium discoideum GN=glkA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 44/153 (28.76%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  173 KEMSAAVVDGSDHVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVISLKHCFFSTTRKNELFLNLVMEYVPESMYRVLKHYSSANQRMPLIYVKLYTYQIFRGLAYIHT 631
            KE S++    S+H +    ST     N  PK    Y   + VG G+FG V++AK  +  + VAIKKV +   + +RE  +++++ HPN + +   F+ T   N+   NLV +++P ++  +LK      +++ + ++K+  YQ+ + + +IH+
Sbjct:   62 KESSSS---NSNHSSSQSSSTAT--VNSNPK-VYPYEIIKQVGQGTFGKVYEAKN-QDNKRVAIKKVEKSNHFISREYDILKIVAHPNCLRILDMFY-TAEDNKKMQNLVFDFIPYTLASLLK-----KRQLSINFIKVLFYQLCQAIKHIHS 201          
The following BLAST results are available for this feature:
BLAST of CB294009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
KOM8_YEAST1.069e-1134.17Probable serine/threonine-protein kinase YOL128C O... [more]
CDK2_CARAU1.823e-1132.80Cell division protein kinase 2 OS=Carassius auratu... [more]
MMK2_MEDSA3.109e-1134.17Mitogen-activated protein kinase homolog MMK2 OS=M... [more]
MPK13_ORYSJ4.061e-1131.06Mitogen-activated protein kinase 13 OS=Oryza sativ... [more]
MPK13_ORYSI4.061e-1131.06Mitogen-activated protein kinase 13 OS=Oryza sativ... [more]
GLKA_DICDI9.047e-1128.76Probable serine/threonine-protein kinase glkA OS=D... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bc02_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bc02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294009 ID=CB294009; Name=CB294009; organism=Citrus sinensis; type=EST; length=633bp
GCTTGGGTCCTCCTTTCTCTCATTCTCCATCGCCACACCATGATCATCAT
CTTCTCCCTCATCCACCGGTGAAATTTCTCCATTTCTCTTCCATCGCTCT
CTCTCTCTCTCTCTCTCCCTCCCTCTCTTTCTTCACCCCAATTTCTCTCC
AAATCTCCCCATGGCCGACGATAAGGAGATGTCTGCTGCTGTTGTTGATG
GGAGTGACCATGTCACTGGTCACATCATTTCCACCACCATTGGAGGCAAA
AATGGAGAGCCAAAACAGACTATTAGCTACATGGCGGAGCGTGTTGTGGG
AACTGGGTCATTTGGTATTGTCTTCCAGGCTAAATGCTTGGAAACTGGAG
AGACTGTGGCTATCAAGAAGGTTTTGCAGGACAGAAGATATAAGAATCGT
GAACTGCAGTTAATGCGGGTGATGGATCATCCAAATGTGATTTCTTTGAA
GCATTGTTTCTTTTCAACTACCAGAAAAAACGAACTTTTCCTCAACTTGG
TTATGGAATACGTACCAGAGAGCATGTATAGGGTTTTGAAGCATTACAGC
AGTGCAAATCAGAGAATGCCCCTCATATATGTGAAACTTTATACGTACCA
GATTTTCAGGGGCCTGGCTTACATCCACACTGT
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