CB294011

Overview
NameCB294011
Unique NameCB294011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB294011_ssr40 microsatellite CB294011_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1814 contig Csv1_Contig1814:32..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_BURMA (Adenylate kinase OS=Burkholderia mallei GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 64/216 (29.63%), Postives = 99/216 (45.83%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------GREDDNVETIMKRLKVFLQSSLPVVQYY--------------EAKGKVQKIDAAKPV-AEVFDAVK 704
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R                                R+DD  ET+ KRL V+   + P++ YY               A  K+  + A + + A VFDA+K
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVFDALK 220
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_BURM9 (Adenylate kinase OS=Burkholderia mallei (strain NCTC 10229) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 64/216 (29.63%), Postives = 99/216 (45.83%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------GREDDNVETIMKRLKVFLQSSLPVVQYY--------------EAKGKVQKIDAAKPV-AEVFDAVK 704
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R                                R+DD  ET+ KRL V+   + P++ YY               A  K+  + A + + A VFDA+K
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVFDALK 220
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_BURM7 (Adenylate kinase OS=Burkholderia mallei (strain NCTC 10247) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 64/216 (29.63%), Postives = 99/216 (45.83%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRNQ-----------------------------GREDDNVETIMKRLKVFLQSSLPVVQYY--------------EAKGKVQKIDAAKPV-AEVFDAVK 704
            LG PG+GKGTQ   I E FG   +S GD+LRA +K+G+  G   +  + EGK+VP  + I L+++ ++E+   + +L DGFPR      A +    +  ++VL  D    E+  R+  R                                R+DD  ET+ KRL V+   + P++ YY               A  K+  + A + + A VFDA+K
Sbjct:    6 LGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGYLFDGFPRTIAQADAMKE-AGVAIDYVLEIDVPFSEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVFDALK 220
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_BRUMB (Adenylate kinase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 52/188 (27.66%), Postives = 90/188 (47.87%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAA-----------FEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAVFTP 719
            LG PG+GKGTQ   + +  G   LS GD+LRA +   SE G   + ++  G++V  E+  +++ + ++     + F++DG+PR      A            +AV +++ +        E  +   I    Q R DDN E   KRL  + + + P+  YY   G+++ I+   PV EV   ++ +  P
Sbjct:    6 LGPPGAGKGTQAGLLTKKHGIPQLSTGDMLRAAVAQQSEIGKRAKAVMDAGQLVSDEIVNQIVSERIDAPDCANGFILDGYPRTVPQAQALSQMLSGKGLKLDAVIELKVDENALVKRMESRVAETIAKGGQVRSDDNPEAFRKRLVEYREKTAPLSSYYAGTGELRIINGMAPVEEVTAEIERILVP 193
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_BRUAB (Adenylate kinase OS=Brucella abortus GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 52/188 (27.66%), Postives = 90/188 (47.87%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAA-----------FEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAVFTP 719
            LG PG+GKGTQ   + +  G   LS GD+LRA +   SE G   + ++  G++V  E+  +++ + ++     + F++DG+PR      A            +AV +++ +        E  +   I    Q R DDN E   KRL  + + + P+  YY   G+++ I+   PV EV   ++ +  P
Sbjct:    6 LGPPGAGKGTQAGLLTKKHGIPQLSTGDMLRAAVAQQSEIGKRAKAVMDAGQLVSDEIVNQIVSERIDAPDCANGFILDGYPRTVPQAQALSQMLSGKGLKLDAVIELKVDENALVKRMESRVAETIAKGGQVRSDDNPEAFRKRLVEYREKTAPLSSYYAGTGELRIINGMAPVEEVTAEIERILVP 193
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_BRUA2 (Adenylate kinase OS=Brucella abortus (strain 2308) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 52/188 (27.66%), Postives = 90/188 (47.87%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAA-----------FEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAVFTP 719
            LG PG+GKGTQ   + +  G   LS GD+LRA +   SE G   + ++  G++V  E+  +++ + ++     + F++DG+PR      A            +AV +++ +        E  +   I    Q R DDN E   KRL  + + + P+  YY   G+++ I+   PV EV   ++ +  P
Sbjct:    6 LGPPGAGKGTQAGLLTKKHGIPQLSTGDMLRAAVAQQSEIGKRAKAVMDAGQLVSDEIVNQIVSERIDAPDCANGFILDGYPRTVPQAQALSQMLSGKGLKLDAVIELKVDENALVKRMESRVAETIAKGGQVRSDDNPEAFRKRLVEYREKTAPLSSYYAGTGELRIINGMAPVEEVTAEIERILVP 193
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_BRUA1 (Adenylate kinase OS=Brucella abortus (strain S19) GN=adk PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 52/188 (27.66%), Postives = 90/188 (47.87%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAA-----------FEAVTKIEPEFVLFFDCSEEEMERRILNRNQGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKAVFTP 719
            LG PG+GKGTQ   + +  G   LS GD+LRA +   SE G   + ++  G++V  E+  +++ + ++     + F++DG+PR      A            +AV +++ +        E  +   I    Q R DDN E   KRL  + + + P+  YY   G+++ I+   PV EV   ++ +  P
Sbjct:    6 LGPPGAGKGTQAGLLTKKHGIPQLSTGDMLRAAVAQQSEIGKRAKAVMDAGQLVSDEIVNQIVSERIDAPDCANGFILDGYPRTVPQAQALSQMLSGKGLKLDAVIELKVDENALVKRMESRVAETIAKGGQVRSDDNPEAFRKRLVEYREKTAPLSSYYAGTGELRIINGMAPVEEVTAEIERILVP 193
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_UNCMA (Adenylate kinase OS=Uncultured methanogenic archaeon RC-I GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 58/204 (28.43%), Postives = 93/204 (45.59%), Query Frame = 3 
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDK-FLIDGFPRNEENRAAFEAV---TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVKA 707
            G PG+GKGTQ   + E     H+S GD+LR  +K G+  G   ++ + +G++VP  + I L++  + +    K FL+DGFPR      A + +      + + V+  D    E+ RR+  R                                R+DD    I  RL V+++ + PV++YY+ K  +  ID  K + EV   VKA
Sbjct:    7 GPPGAGKGTQAKFLSEELNVPHISTGDILRENVKKGTALGLKAKSYMDKGELVPDNLLIDLIKDRLSQPDCRKGFLLDGFPRTIPQAEALDEILDDINKKLDGVINIDVGSGELIRRLSGRRICRSCGASYHLVFNPPKAKDLCDSCGGELYQRDDDKEVAIKNRLDVYVRQTQPVLEYYKKKNLLIDIDGEKEIDEVTADVKA 210
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_SODGM (Adenylate kinase OS=Sodalis glossinidius (strain morsitans) GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 60/208 (28.85%), Postives = 99/208 (47.60%), Query Frame = 3 
Query:  192 LGGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESG-NDKFLIDGFPRNEENRAAFEAVTKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKG-----KVQKIDAAKPVAEVFDAVKAV 710
            LG PG+GKGTQ   I+E +G   +S GD+LRA +K+ SE G   + ++  GK+V  E+ I L ++ +++    + FL+DGFPR      A + V  I  ++VL F   +  +  RI+ R                                R+DD  +T+ KRL  + Q + P++ YY  +      +   +D  + V+EV   + A+
Sbjct:    6 LGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKAQSELGRQAKALMDAGKLVTDELVIALAKERIKQDHCRNGFLLDGFPRTLPQADAMKEV-GIAVDYVLEFAVPDSLIIDRIVGRRVHAPSGRVYHVKFNPPKQEGKDDVTGELLTSRKDDQEDTVRKRLVEYHQQTAPLIDYYRKEADAGNTRYFTLDGTRNVSEVSAELAAI 212
[Close]
BLAST of CB294011 vs. ExPASy Swiss-Prot
Match: KAD_PYRHO (Adenylate kinase OS=Pyrococcus horikoshii GN=adk PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 55/204 (26.96%), Postives = 95/204 (46.57%), Query Frame = 3 
Query:  195 GGPGSGKGTQCANIVEHFGYTHLSAGDLLRAEIKSGSENGTMIQNMIKEGKIVPSEVTIKLLQKAMEESGNDKFLIDGFPRNEENRAAFEAV-----TKIEPEFVLFFDCSEEEMERRILNRN-----------------------------QGREDDNVETIMKRLKVFLQSSLPVVQYYEAKGKVQKIDAAKPVAEVFDAVK 704
            G PGSGK TQ   I E +G T++S+GD++RAEI S +  G  ++  +  G ++P  +   L+   +     + F++DG+PR  E   A E        KI+    +F   ++EE  RRI  R                                R DD  E + KR  +++++  P++++Y+ +G   KID    + EV++ ++
Sbjct:    7 GPPGSGKSTQARRITERYGLTYISSGDIIRAEISSRTPLGLEMEKYLSRGDLIPDTIVNTLIISKLRRV-RENFIMDGYPRTPEQVIALENYLYDHGIKIDVAIDIFI--TKEESVRRISGRRICSKCGAVYHIEFNPPKIPGKCDICGGDLIQRPDDRPEIVEKRYDIYMRNMEPIIKFYQKQGIYVKIDGHGSINEVWERIR 207
The following BLAST results are available for this feature:
BLAST of CB294011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
KAD_BURMA1.823e-1629.63Adenylate kinase OS=Burkholderia mallei GN=adk PE=... [more]
KAD_BURM91.823e-1629.63Adenylate kinase OS=Burkholderia mallei (strain NC... [more]
KAD_BURM71.823e-1629.63Adenylate kinase OS=Burkholderia mallei (strain NC... [more]
KAD_BRUMB1.823e-1627.66Adenylate kinase OS=Brucella melitensis biotype 2 ... [more]
KAD_BRUAB1.823e-1627.66Adenylate kinase OS=Brucella abortus GN=adk PE=3 S... [more]
KAD_BRUA21.823e-1627.66Adenylate kinase OS=Brucella abortus (strain 2308)... [more]
KAD_BRUA11.823e-1627.66Adenylate kinase OS=Brucella abortus (strain S19) ... [more]
KAD_UNCMA2.380e-1628.43Adenylate kinase OS=Uncultured methanogenic archae... [more]
KAD_SODGM2.380e-1628.85Adenylate kinase OS=Sodalis glossinidius (strain m... [more]
KAD_PYRHO2.380e-1626.96Adenylate kinase OS=Pyrococcus horikoshii GN=adk P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06bf01_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06bf01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294011 ID=CB294011; Name=CB294011; organism=Citrus sinensis; type=EST; length=719bp
TTGGCATCCCTCTGCCTTCTTTCTTTCCCTCCATATTCTTCTCTCTCTCT
CCAAACAAAACAACGCTCGCAATTCGCTAAGATCGGTTATTCAGACTGAG
TTAGTTGGCGCTGATGGGAACTGTGGTTGAAACTCCTGTCAAGGAAGCAG
ATGCTACCGTAACTGTGAAGAAGCCCACTGTTGTTTTTGTTTTGGGTGGA
CCAGGCAGTGGAAAAGGAACCCAGTGCGCAAACATTGTTGAACACTTTGG
ATACACCCATCTCAGTGCTGGTGATCTTCTCAGAGCCGAAATCAAATCTG
GCTCTGAAAATGGAACCATGATTCAGAACATGATTAAAGAGGGAAAAATC
GTTCCTTCAGAGGTCACAATTAAGCTTCTCCAAAAAGCAATGGAGGAAAG
TGGAAATGATAAATTTCTCATCGATGGTTTTCCCAGAAACGAGGAAAATC
GTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCAGAATTCGTTCTGTTT
TTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCATTTTGAATAGGAATCA
GGGAAGAGAAGATGATAACGTTGAGACAATTATGAAGCGGCTTAAGGTTT
TCTTACAATCTAGTCTCCCTGTGGTTCAATATTATGAAGCTAAGGGTAAA
GTTCAGAAGATTGATGCTGCAAAGCCTGTTGCAGAGGTTTTTGATGCTGT
TAAAGCTGTTTTTACCCCA
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