CB294017

Overview
NameCB294017
Unique NameCB294017
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH064_ARATH (Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 6.673e-21
Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  459 MDKKRKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            +  KRK            + K   E +++   KG  N    E   ++ K ++ K  ++    DYIHVRARRGQATD HSLAER RREKIS++MK LQ +VPGC+KVTGKA MLDEI
Sbjct:  121 LKNKRKPEVKTREE-QKTEKKIKVEAETESSMKGKSNMGNTEASSDTSK-ETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEI 234          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.716e-21
Identity = 57/111 (51.35%), Postives = 75/111 (67.57%), Query Frame = 3
Query:  480 RTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKAD-SEKKVAKEPPK-DYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            + N  S   + Q+K   E K++K++K  +    + E     K++ S  + + E  K DYIHVRARRG+ATD HSLAER RREKIS++MK LQ +VPGC+KVTGKA MLDEI
Sbjct:   80 KNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETEPSMKGKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEI 190          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.326e-20
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 3
Query:  537 KSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            K  K++ G+    K+ E+E +   D  +K     PKD +HVRA+RGQATDSHSLAERVRREKI+ER+K LQ LVPGC K  G A MLD I
Sbjct:   69 KGNKEESGSKRRRKRSEEEEAMNGDETQK-----PKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVI 153          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.378e-20
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  522 DPREVKSKKQKKG-NVNDAKKEEKENSPKADSEK-KVAKEPPK-DYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            +P E  S  + +  + +  K++E+E   K+ ++K K + E  K  Y+HVRARRGQATD+HSLAER RREKI+ RMK+LQ+LVPGCDK+ G A +LDEI
Sbjct:  137 EPAETDSMVENQNQSYSSGKRKEREKKVKSSTKKNKSSVESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEI 234          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.288e-18
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  465 KKRKNRTNA-SSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            KKRK+   A S+S NS   +      ++    GN++     +  +S +    K   +E  ++ +HVRARRGQATDSHS+AERVRR KI+ER+K LQ +VPGC K  G A MLDEI
Sbjct:   86 KKRKSLMEAVSTSENSVSDQTLSTSSAQVSINGNIST----KNNSSRRGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEI 196          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH060_ARATH (Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = 3
Query:  540 SKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVT 779
            ++  + G   D +K+ K ++ K  S ++  K P   Y+HVRARRGQATDSHSLAER RREKI+ RMK+LQ+LVPGCDK T
Sbjct:  168 NQNNRNGKRKDFEKKGKSSTKKNKSSEENEKLP---YVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGT 244          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.701e-16
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  465 KKRKNRTNASSSFNSAQSKDPREVKSKKQKKGNVNDAKKEEKENSPKADSEKKVAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            KKRK      SS  ++   D   V + +   G++   K+ +K+   + + E++V        +HVRARRGQATDSHSLAERVRR KI+ER++ LQ +VPGC K  G A MLDEI
Sbjct:   91 KKRKALLPTLSSSETSGVSDNTNVIATET--GSLRRGKRLKKKKEEEDEKEREV--------VHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEI 194          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.921e-13
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = 3
Query:  558 GNVNDAKKEEKENSPKADSEKKVA---KEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            G +N   + + +  P+A +          PP+    +RARRGQATD HS+AER+RRE+I+ERMK LQ+LVP  +K T KA MLDEI
Sbjct:  102 GLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNK-TDKASMLDEI 186          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  624 VAKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            V ++ P+    VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP  +K T KA MLDEI
Sbjct:   92 VVRQKPR----VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNK-TDKASMLDEI 147          
BLAST of CB294017 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.648e-11
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 3
Query:  627 AKEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKILQKLVPGCDKVTGKAFMLDEI 806
            A   P+    VRARRGQATD HS+AER+RRE+I+ERMK LQ+LVP  +K T KA MLDEI
Sbjct:  120 ATAQPQTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNK-TDKASMLDEI 178          
The following BLAST results are available for this feature:
BLAST of CB294017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
BH064_ARATH6.673e-2148.28Transcription factor bHLH64 OS=Arabidopsis thalian... [more]
BEE2_ARATH8.716e-2151.35Transcription factor BEE 2 OS=Arabidopsis thaliana... [more]
BH075_ARATH4.326e-2056.67Transcription factor bHLH75 OS=Arabidopsis thalian... [more]
BH048_ARATH7.378e-2053.06Transcription factor bHLH48 OS=Arabidopsis thalian... [more]
BEE3_ARATH5.288e-1846.09Transcription factor BEE 3 OS=Arabidopsis thaliana... [more]
BH060_ARATH7.635e-1756.25Transcription factor bHLH60 OS=Arabidopsis thalian... [more]
BEE1_ARATH1.701e-1645.61Transcription factor BEE 1 OS=Arabidopsis thaliana... [more]
BH066_ARATH3.921e-1348.84Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH082_ARATH1.261e-1163.93Transcription factor bHLH82 OS=Arabidopsis thalian... [more]
BH069_ARATH1.648e-1165.00Transcription factor bHLH69 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS01_06dc08_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_06dc08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB294017 ID=CB294017; Name=CB294017; organism=Citrus sinensis; type=EST; length=807bp
GGAGCTCTCTCTCTCTTGCTTAGCTTCTCTTTCCAGTTTCCAGATCACTT
TCTCGAAAACTAGCATTTTCAATTCCAGAGCTTTTCAAAACAAAAAAAAT
AGTGAAAAAAATGGCAGCCTTTTCATACCAACAACACCACCACCCTTTTC
TTTTAGACTCGTCAGAGTTCATTGAGGAAGGCAGTTTTTTCTCTCAACTT
TATTACCCACCAAAATTTCCTACTCATGATGATCATCAAGAGATGATTGT
TGTTAATAATAACAGCAATAATCTTCTTGATGCAGCTGCAGTTTTTGAAA
CTAGCTGTGGTGACAATCATGATCATCACAGTGATGATAATTGTAATGAG
CCTTCTAATAATAATTCTTTAGCCACCAAAAACCAAAGCACTGCAGTGTC
TTCAACTGAGCAGCAGGTCACTCAGAGTACTGTGACGACTACCGCTACTA
CTACTCGTATGGACAAGAAAAGGAAGAACAGAACTAATGCTTCCTCTTCT
TTCAATTCTGCTCAGTCAAAGGATCCAAGAGAAGTGAAAAGCAAGAAGCA
AAAGAAAGGCAATGTTAATGATGCCAAGAAAGAAGAAAAGGAAAATAGTC
CTAAAGCTGATAGTGAGAAGAAAGTTGCTAAAGAACCTCCAAAAGATTAC
ATTCATGTTAGAGCAAGGAGGGGTCAAGCAACTGACAGCCACAGCTTAGC
AGAAAGGGTAAGAAGAGAGAAAATTAGTGAGAGGATGAAAATTTTGCAAA
AGCTTGTTCCTGGCTGTGACAAGGTAACTGGTAAGGCCTTCATGTTGGAT
GAAATTA
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